RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 DEFB133Q30KQ1 61 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 TMEM259Q4ZIN3 620 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 ARSIQ5FYB1 569 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 C6orf132Q5T0Z8 1188 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 KRBA2Q6ZNG9 492 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 PARGQ86W56 976 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 LMX1AQ8TE12 382 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 STK32AQ8WU08 396 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 FEM1CQ96JP0 617 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 IL12RB2Q99665 862 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 ARHGAP9Q9BRR9 750 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 SLC4A5Q9BY07 1137 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 HDAC8Q9BY41 377 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 MUC3BQ9H195 1237 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 THAP9Q9H5L6 903 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 GPR27Q9NS67 375 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 COX16Q9P0S2 106 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 KLF15Q9UIH9 416 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 VANGL2Q9ULK5 521 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 HS3ST2Q9Y278 367 aa17.58■□□□□ 0.4
VIM-204ENST00000478746 CCDC187A0A096LP49 1063 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 TPP1O14773 563 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 MUSKO15146 869 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 CLDN11O75508 207 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 GJB6O95452 261 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 JUNDP17535 347 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 PRCPP42785 496 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 RABIFP47224 123 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 RPIAP49247 311 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 RPS21P63220 83 aaKnown RBP17.57■□□□□ 0.4
VIM-204ENST00000478746 CDK17Q00537 523 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 LINC00303Q3SY05 128 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 COLEC12Q5KU26 742 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 PERM1Q5SV97 790 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 ANKRD40Q6AI12 368 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 DENND1BQ6P3S1 775 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 KYAT3Q6YP21 454 aaKnown RBP17.57■□□□□ 0.4
VIM-204ENST00000478746 ATG14Q6ZNE5 492 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 USP53Q70EK8 1073 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 WDR48Q8TAF3 677 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 GLMNQ92990 594 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 SPATA32Q96LK8 384 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 FAM204AQ9H8W3 233 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 METTL14Q9HCE5 456 aaKnown RBP17.57■□□□□ 0.4
VIM-204ENST00000478746 DDIT4Q9NX09 232 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 ATXN7L1Q9ULK2 861 aaPredicted RBP17.57■□□□□ 0.4
VIM-204ENST00000478746 TBC1D30Q9Y2I9 924 aa17.57■□□□□ 0.4
VIM-204ENST00000478746 COL27A1Q8IZC6 1860 aaPredicted RBP17.56■□□□□ 0.4
VIM-204ENST00000478746 UBR5O95071 2799 aaPredicted RBP17.56■□□□□ 0.4
VIM-204ENST00000478746 FAM237AA0A1B0GTK4 181 aa17.56■□□□□ 0.4
VIM-204ENST00000478746 E5RJQ4 531 aa17.56■□□□□ 0.4
VIM-204ENST00000478746 K7ERQ8 282 aa17.56■□□□□ 0.4
VIM-204ENST00000478746 RNF103O00237 685 aa17.56■□□□□ 0.4
VIM-204ENST00000478746 ITGA2BP08514 1039 aa17.56■□□□□ 0.4
VIM-204ENST00000478746 IRAK1P51617 712 aa17.56■□□□□ 0.4
VIM-204ENST00000478746 FGL2Q14314 439 aa17.56■□□□□ 0.4
VIM-204ENST00000478746 TAF5Q15542 800 aa17.56■□□□□ 0.4
VIM-204ENST00000478746 RRAGAQ7L523 313 aa17.56■□□□□ 0.4
VIM-204ENST00000478746 TMEM110Q86TL2 294 aa17.56■□□□□ 0.4
VIM-204ENST00000478746 CHST14Q8NCH0 376 aa17.56■□□□□ 0.4
VIM-204ENST00000478746 PPP1R16AQ96I34 528 aa17.56■□□□□ 0.4
VIM-204ENST00000478746 IL36AQ9UHA7 158 aa17.56■□□□□ 0.4
VIM-204ENST00000478746 TERTO14746 1132 aaKnown RBP17.55■□□□□ 0.4
VIM-204ENST00000478746 FPGTO14772 594 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 PMM2O15305 246 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 RAD51BO15315 384 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 SNAP91O60641 907 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 RRM1P23921 792 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 RECQLP46063 649 aaPredicted RBP17.55■□□□□ 0.4
VIM-204ENST00000478746 CDH4P55283 916 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 CETN1Q12798 172 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 SGCGQ13326 291 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 MTA1Q13330 715 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 PKP1Q13835 747 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 PDE1CQ14123 709 aaPredicted RBP17.55■□□□□ 0.4
VIM-204ENST00000478746 SPIDRQ14159 915 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 DRAP1Q14919 205 aaPredicted RBP17.55■□□□□ 0.4
VIM-204ENST00000478746 KIAA1161Q6NSJ0 714 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 LURAP1LQ8IV03 231 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 GRIN3AQ8TCU5 1115 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 BTN2A2Q8WVV5 523 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 SGF29Q96ES7 293 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 PSMB7Q99436 277 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 C2orf49Q9BVC5 232 aaPredicted RBP17.55■□□□□ 0.4
VIM-204ENST00000478746 BOCQ9BWV1 1114 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 STARD5Q9NSY2 213 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 HS3ST4Q9Y661 456 aa17.55■□□□□ 0.4
VIM-204ENST00000478746 SMAD6O43541 496 aaKnown RBP17.54■□□□□ 0.4
VIM-204ENST00000478746 LEFTY1O75610 366 aa17.54■□□□□ 0.4
VIM-204ENST00000478746 HSP90AA1P07900 732 aaKnown RBP17.54■□□□□ 0.4
VIM-204ENST00000478746 SLC5A2P31639 672 aa17.54■□□□□ 0.4
VIM-204ENST00000478746 NEK3P51956 506 aa17.54■□□□□ 0.4
VIM-204ENST00000478746 INHBCP55103 352 aa17.54■□□□□ 0.4
VIM-204ENST00000478746 NFKB2Q00653 900 aa17.54■□□□□ 0.4
VIM-204ENST00000478746 C14orf80Q86SX3 495 aa17.54■□□□□ 0.4
VIM-204ENST00000478746 DEFB106AQ8N104 65 aa17.54■□□□□ 0.4
VIM-204ENST00000478746 EXTL1Q92935 676 aa17.54■□□□□ 0.4
VIM-204ENST00000478746 NAT6Q93015 286 aa17.54■□□□□ 0.4
VIM-204ENST00000478746 CCDC3Q9BQI4 270 aa17.54■□□□□ 0.4
VIM-204ENST00000478746 SRRTQ9BXP5 876 aaKnown RBP17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms