RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 IGLV3-10A0A075B6K4 115 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 E9PAM4 449 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 G3V2L1 256 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 ZNF195O14628 629 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 USP12O75317 370 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 SNUPNO95149 360 aaKnown RBP12.41□□□□□ -0.42
PTPRF-212ENST00000477970 KLHL2O95198 593 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 TOP3BO95985 862 aaKnown RBP12.41□□□□□ -0.42
PTPRF-212ENST00000477970 RALBP11234 206 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 ACLYP53396 1101 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 PAN2Q504Q3 1202 aaKnown RBP12.41□□□□□ -0.42
PTPRF-212ENST00000477970 CLLU1OSQ5K130 101 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 C16orf46Q6P387 395 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 CES3Q6UWW8 571 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 RINLQ6ZS11 566 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 GALNT7Q86SF2 657 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 RTN4RL1Q86UN2 441 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-212ENST00000477970 PRKD2Q9BZL6 878 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 DCLRE1BQ9H816 532 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 ATP13A1Q9HD20 1204 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 CHRAC1Q9NRG0 131 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 TRMT13Q9NUP7 481 aaKnown RBP12.41□□□□□ -0.42
PTPRF-212ENST00000477970 INPP5FQ9Y2H2 1132 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 HS3ST4Q9Y661 456 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 DNAL1Q4LDG9 190 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 RWDD4Q6NW29 188 aaKnown RBP12.41□□□□□ -0.42
PTPRF-212ENST00000477970 ZC3HC1Q86WB0 502 aaKnown RBP12.41□□□□□ -0.42
PTPRF-212ENST00000477970 TEX9Q8N6V9 391 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 CELF6Q96J87 481 aaKnown RBP12.41□□□□□ -0.42
PTPRF-212ENST00000477970 VPS39Q96JC1 886 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 AGAP2Q99490 1192 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 C1QTNF1Q9BXJ1 281 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 DENND2DQ9H6A0 471 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-212ENST00000477970 CLIC5Q9NZA1 410 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 APOBEC2Q9Y235 224 aaKnown RBP12.41□□□□□ -0.42
PTPRF-212ENST00000477970 DNAJC16Q9Y2G8 782 aa12.41□□□□□ -0.42
PTPRF-212ENST00000477970 A0A096LPK6 155 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 ITM2AO43736 263 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 DDHD2O94830 711 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 TPBGLP0DKB5 382 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 RHOQP17081 205 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 NMBRP28336 390 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 PSEN1P49768 467 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 HSP90AA5PQ58FG0 334 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 PPM1JQ5JR12 505 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 TTC7BQ86TV6 843 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 PPHLN1Q8NEY8 458 aaKnown RBP12.4□□□□□ -0.42
PTPRF-212ENST00000477970 LINC01599Q8WXQ3 324 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 OXCT2Q9BYC2 517 aaPredicted RBP12.4□□□□□ -0.42
PTPRF-212ENST00000477970 SEZ6LQ9BYH1 1024 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 RETREG1Q9H6L5 497 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 NMUR1Q9HB89 426 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 TREX1Q9NSU2 369 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 OLA1Q9NTK5 396 aaKnown RBP12.4□□□□□ -0.42
PTPRF-212ENST00000477970 TMEM248Q9NWD8 314 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 PLA2G4CQ9UP65 541 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 NOD1Q9Y239 953 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 L3MBTL1Q9Y468 752 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 TCAF1Q9Y4C2 921 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 CDY1Q9Y6F8 540 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 VWA8A3KMH1 1905 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 GREB1Q4ZG55 1949 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 A0A1W2PQH9 124 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 OR6C75A6NL08 312 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 F8W8V4 182 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 DFFAO00273 331 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 GM2AP17900 193 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 PRDX6P30041 224 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 ARCN1P48444 511 aaKnown RBP12.4□□□□□ -0.42
PTPRF-212ENST00000477970 SMARCB1Q12824 385 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 E2F5Q15329 346 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 SLC39A12Q504Y0 691 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 KIAA0930Q6ICG6 404 aaPredicted RBP12.4□□□□□ -0.42
PTPRF-212ENST00000477970 RANBP10Q6VN20 620 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 ARHGAP36Q6ZRI8 547 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 OTOP3Q7RTS5 596 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 HASPINQ8TF76 798 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.4□□□□□ -0.426e-7■■■■■ 41.4
PTPRF-212ENST00000477970 C2orf71A6NGG8 1288 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 ATP9BO43861 1147 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 PEX11BO96011 259 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 C2P06681 752 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 HNRNPDQ14103 355 aaKnown RBP12.4□□□□□ -0.42
PTPRF-212ENST00000477970 C1orf53Q5VUE5 145 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 ZCCHC23Q6ZST2 131 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 TREML1Q86YW5 311 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 TADA1Q96BN2 335 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 HTATIP2Q9BUP3 242 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 SLC25A51Q9H1U9 297 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 YY1AP1Q9H869 796 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 ZNF395Q9H8N7 513 aaPredicted RBP12.4□□□□□ -0.42
PTPRF-212ENST00000477970 IARS2Q9NSE4 1012 aaKnown RBP12.4□□□□□ -0.42
PTPRF-212ENST00000477970 PCDHB5Q9Y5E4 795 aa12.4□□□□□ -0.42
PTPRF-212ENST00000477970 SPECC1L-ADORA2AF8WAN1 911 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 B4GALT3O60512 393 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 PAMP19021 973 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 TUBP50607 506 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 METTL21CQ5VZV1 264 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 ZYG11AQ6WRX3 759 aa12.39□□□□□ -0.43
PTPRF-212ENST00000477970 KIAA0408Q6ZU52 694 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms