RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 B4E171 279 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 CLSTN1O94985 981 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 PCDH8O95206 1070 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 RECKO95980 971 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 CD99P14209 185 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 COX6B1P14854 86 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 BPIP17213 487 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 CSTF2P33240 577 aaKnown RBP eCLIP8.25□□□□□ -1.09
USP54-211ENST00000474929 TSPAN7P41732 249 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 YPEL5P62699 121 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 ARHGEF7Q14155 803 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 MAP7Q14244 749 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 C16orf72Q14CZ0 275 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 NR6A1Q15406 480 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 TMEM259Q4ZIN3 620 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 L1TD1Q5T7N2 865 aaKnown RBP8.25□□□□□ -1.09
USP54-211ENST00000474929 PIK3R6Q5UE93 754 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 MACC1Q6ZN28 852 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 CLEC20AQ6ZU45 233 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 SCD5Q86SK9 330 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 UNC93AQ86WB7 457 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 UNC45BQ8IWX7 931 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 IQCKQ8N0W5 287 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 ESX1Q8N693 406 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 PCDH19Q8TAB3 1148 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 ERCC4Q92889 916 aaPredicted RBP8.25□□□□□ -1.09
USP54-211ENST00000474929 BMFQ96LC9 184 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 LENG8Q96PV6 779 aaPredicted RBP8.25□□□□□ -1.09
USP54-211ENST00000474929 MFRPQ9BY79 579 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 FOXP1Q9H334 677 aaPredicted RBP8.25□□□□□ -1.09
USP54-211ENST00000474929 VRTNQ9H8Y1 702 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 RABGEF1Q9UJ41 708 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 TLK1Q9UKI8 766 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 ZNF451Q9Y4E5 1061 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 B3GALT1Q9Y5Z6 326 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 DIDO1Q9BTC0 2240 aaKnown RBP8.25□□□□□ -1.09
USP54-211ENST00000474929 NPHP3-ACAD11A0A0J9YXS1 232 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 PP2D1A8MPX8 630 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 HHLA1C9JL84 531 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 K7EM74 188 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 MCF2LO15068 1137 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 NUDT21O43809 227 aaKnown RBP8.24□□□□□ -1.09
USP54-211ENST00000474929 PFKFB2O60825 505 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 GCATO75600 419 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 BEST1O76090 585 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 CBX6O95503 412 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 CCL4P13236 92 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 CCDC130P13994 396 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 CTSEP14091 401 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 TSHRP16473 764 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 TAS2R38P59533 333 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 PPARDQ03181 441 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 EIF2B5Q13144 721 aaKnown RBP8.24□□□□□ -1.09
USP54-211ENST00000474929 ART3Q13508 389 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 NADK2Q4G0N4 442 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 TMEM119Q4V9L6 283 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 ARSHQ5FYA8 562 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 BMP2KLQ5H9B9 411 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 CERCAMQ5T4B2 595 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 PIP5KL1Q5T9C9 394 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 FAXCQ5TGI0 409 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 CEACAM20Q6UY09 585 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 ZNF720Q7Z2F6 126 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 GPRIN1Q7Z2K8 1008 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 SYCP3Q8IZU3 236 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 RBFAQ8N0V3 343 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 OR5B17Q8NGF7 314 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 ATL2Q8NHH9 583 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 WFDC5Q8TCV5 224 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 NOC3LQ8WTT2 800 aaKnown RBP8.24□□□□□ -1.09
USP54-211ENST00000474929 RNF139Q8WU17 664 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 ASB12Q8WXK4 309 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 KLK6Q92876 244 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 ART4Q93070 314 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 JAKMIP2Q96AA8 810 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 PNPLA2Q96AD5 504 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 LMLNQ96KR4 655 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 MMTAG2Q9BU76 263 aaKnown RBP8.24□□□□□ -1.09
USP54-211ENST00000474929 SLC25A23Q9BV35 468 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 SLC17A9Q9BYT1 436 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 MRPL40Q9NQ50 206 aaKnown RBP8.24□□□□□ -1.09
USP54-211ENST00000474929 SLC39A1Q9NY26 324 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 RRN3Q9NYV6 651 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 TMEM63CQ9P1W3 806 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 SIRPGQ9P1W8 387 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 KLF15Q9UIH9 416 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 SLC25A13Q9UJS0 675 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 KCND3Q9UK17 655 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 GPR34Q9UPC5 381 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 USP3Q9Y6I4 520 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 DOCK9Q9BZ29 2069 aa8.24□□□□□ -1.09
USP54-211ENST00000474929 POLEQ07864 2286 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 LOC101059948A0A1B0GTJ6 334 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 A6NCN8 305 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 POM121BA6NF01 834 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 EIF3DO15371 548 aaKnown RBP eCLIP8.23□□□□□ -1.09
USP54-211ENST00000474929 GRID2O43424 1007 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 PPP1R37O75864 691 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 PRNPP04156 253 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 FGF3P11487 239 aaPredicted RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms