RNA–Protein interactions for RNA: ENST00000468300.5

BRCA1-208, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 3,273 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-208ENST00000468300 MYL4P12829 197 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 GLDCP23378 1020 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 CDC25CP30307 473 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 FDFT1P37268 417 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 ELK3P41970 407 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 SLC11A2P49281 568 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 NUMBP49757 651 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 CDH4P55283 916 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 SPARCL1Q14515 664 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 EGFLAMQ63HQ2 1017 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 ARHGEF18Q6ZSZ5 1173 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 PID1Q7Z2X4 250 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 WDR75Q8IWA0 830 aaKnown RBP8.42□□□□□ -1.06
BRCA1-208ENST00000468300 BBS7Q8IWZ6 715 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 ATPAF2Q8N5M1 289 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 FBXO36Q8NEA4 188 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 EXOC4Q96A65 974 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 LMLNQ96KR4 655 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 ASAH2Q9NR71 780 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 IPO11Q9UI26 975 aaKnown RBP8.42□□□□□ -1.06
BRCA1-208ENST00000468300 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.42□□□□□ -1.06
BRCA1-208ENST00000468300 CCDC195A0A1B0GUA6 201 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 LEFTY2O00292 366 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 EIF3HO15372 352 aaKnown RBP eCLIP8.42□□□□□ -1.06
BRCA1-208ENST00000468300 TSPAN3O60637 253 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 RNF40O75150 1001 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 GLP2RO95838 553 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 ABHD2P08910 425 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 HNRNPA1P09651 372 aaKnown RBP eCLIP8.42□□□□□ -1.06
BRCA1-208ENST00000468300 PTPN2P17706 415 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 OR1E1P30953 314 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 ADRA1AP35348 466 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 IFNAR2P48551 515 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 ARL4CP56559 192 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 SLC10A7Q0GE19 358 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 CEP85LQ5SZL2 805 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 CENPUQ71F23 418 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 CMTM8Q8IZV2 173 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 SPATA22Q8NHS9 363 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 USP33Q8TEY7 942 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 USP13Q92995 863 aaPredicted RBP8.42□□□□□ -1.06
BRCA1-208ENST00000468300 LRRC3BQ96PB8 259 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 VAT1Q99536 393 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 ACE2Q9BYF1 805 aaPredicted RBP8.42□□□□□ -1.06
BRCA1-208ENST00000468300 PRKD2Q9BZL6 878 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 PIH1D1Q9NWS0 290 aaKnown RBP8.42□□□□□ -1.06
BRCA1-208ENST00000468300 ZDHHC7Q9NXF8 308 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 RABGEF1Q9UJ41 708 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 TRHDEQ9UKU6 1024 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 ARHGAP26Q9UNA1 814 aa8.42□□□□□ -1.06
BRCA1-208ENST00000468300 MIA3Q5JRA6 1907 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 FOXO6A8MYZ6 492 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 PRAMEF11O60813 436 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 PRAMEF12O95522 483 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 AP2A1O95782 977 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 PFKLP17858 780 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 SSTR1P30872 391 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 SESN3P58005 492 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 MSLNQ13421 630 aaPredicted RBP8.41□□□□□ -1.06
BRCA1-208ENST00000468300 PDAP1Q13442 181 aaKnown RBP8.41□□□□□ -1.06
BRCA1-208ENST00000468300 PARP15Q460N3 678 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 AGAP9Q5VTM2 703 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 DENND2CQ68D51 928 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 DENND5AQ6IQ26 1287 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 LRRC8BQ6P9F7 803 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 CHST9Q7L1S5 443 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 GRASPQ7Z6J2 395 aaPredicted RBP8.41□□□□□ -1.06
BRCA1-208ENST00000468300 PRPF39Q86UA1 669 aaKnown RBP8.41□□□□□ -1.06
BRCA1-208ENST00000468300 ANKRD13BQ86YJ7 626 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 LRRC49Q8IUZ0 686 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 CYP4X1Q8N118 509 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 SH2D3CQ8N5H7 860 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 C12orf76Q8N812 135 aaPredicted RBP8.41□□□□□ -1.06
BRCA1-208ENST00000468300 VOPP1Q96AW1 172 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 TLCD1Q96CP7 247 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 RASSF4Q9H2L5 321 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 PIF1Q9H611 641 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 CTNNAL1Q9UBT7 734 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 CDH22Q9UJ99 828 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 TTC24A2A3L6 582 aaPredicted RBP8.41□□□□□ -1.06
BRCA1-208ENST00000468300 NDC80O14777 642 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 MTSS1O43312 755 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 PIAS1O75925 651 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 MT-CYBP00156 380 aaPredicted RBP8.41□□□□□ -1.06
BRCA1-208ENST00000468300 CEBPBP17676 345 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 BMP8BP34820 402 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 NIPAL4Q0D2K0 466 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 EFTUD2Q15029 972 aaKnown RBP eCLIP8.41□□□□□ -1.06
BRCA1-208ENST00000468300 POLD3Q15054 466 aaPredicted RBP8.41□□□□□ -1.06
BRCA1-208ENST00000468300 NDUFAF2Q8N183 169 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 OR7D4Q8NG98 312 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 ITFG1Q8TB96 612 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 MRPS31Q92665 395 aaKnown RBP8.41□□□□□ -1.06
BRCA1-208ENST00000468300 FCRL5Q96RD9 977 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 SLX1AQ9BQ83 275 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 DHRS4Q9BTZ2 278 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 CASS4Q9NQ75 786 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 CFAP97Q9P2B7 532 aa8.41□□□□□ -1.06
BRCA1-208ENST00000468300 KLHL8Q9P2G9 620 aaPredicted RBP8.41□□□□□ -1.06
BRCA1-208ENST00000468300 BLOC1S6Q9UL45 172 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms