RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 IGLV3-19P01714 112 aa20.35■□□□□ 0.85
COL9A3-202ENST00000452372 DNTTP04053 509 aa20.35■□□□□ 0.85
COL9A3-202ENST00000452372 OXTRP30559 389 aa20.35■□□□□ 0.85
COL9A3-202ENST00000452372 SERPINH1P50454 418 aaKnown RBP20.35■□□□□ 0.85
COL9A3-202ENST00000452372 CDH6P55285 790 aa20.35■□□□□ 0.85
COL9A3-202ENST00000452372 GEMIN4P57678 1058 aaKnown RBP20.35■□□□□ 0.85
COL9A3-202ENST00000452372 GSDMDP57764 484 aa20.35■□□□□ 0.85
COL9A3-202ENST00000452372 ELAVL3Q14576 367 aaKnown RBP20.35■□□□□ 0.85
COL9A3-202ENST00000452372 ATP13A4Q4VNC1 1196 aa20.35■□□□□ 0.85
COL9A3-202ENST00000452372 SLC36A4Q6YBV0 504 aa20.35■□□□□ 0.85
COL9A3-202ENST00000452372 CACUL1Q86Y37 369 aa20.35■□□□□ 0.85
COL9A3-202ENST00000452372 TSC1Q92574 1164 aa20.35■□□□□ 0.85
COL9A3-202ENST00000452372 HMCESQ96FZ2 354 aa20.35■□□□□ 0.85
COL9A3-202ENST00000452372 CSPG4P5Q96PW8 444 aa20.35■□□□□ 0.85
COL9A3-202ENST00000452372 CEP44Q9C0F1 390 aa20.35■□□□□ 0.85
COL9A3-202ENST00000452372 KLC2Q9H0B6 622 aa20.35■□□□□ 0.85
COL9A3-202ENST00000452372 TMEM74BQ9NUR3 256 aa20.35■□□□□ 0.85
COL9A3-202ENST00000452372 RCOR3Q9P2K3 495 aaPredicted RBP20.35■□□□□ 0.85
COL9A3-202ENST00000452372 SCML1Q9UN30 329 aa20.35■□□□□ 0.85
COL9A3-202ENST00000452372 TFR2Q9UP52 801 aa20.35■□□□□ 0.85
COL9A3-202ENST00000452372 REXO2Q9Y3B8 237 aaKnown RBP20.35■□□□□ 0.85
COL9A3-202ENST00000452372 NYNRINQ9P2P1 1898 aaKnown RBP20.35■□□□□ 0.85
COL9A3-202ENST00000452372 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.34■□□□□ 0.85
COL9A3-202ENST00000452372 C4orf47A7E2U8 309 aa20.34■□□□□ 0.85
COL9A3-202ENST00000452372 MCF2LO15068 1137 aa20.34■□□□□ 0.85
COL9A3-202ENST00000452372 AMPD1P23109 780 aa20.34■□□□□ 0.85
COL9A3-202ENST00000452372 IL4RP24394 825 aa20.34■□□□□ 0.85
COL9A3-202ENST00000452372 SLC1A1P43005 524 aa20.34■□□□□ 0.85
COL9A3-202ENST00000452372 PTGER3P43115 390 aa20.34■□□□□ 0.85
COL9A3-202ENST00000452372 NOP2P46087 812 aaKnown RBP20.34■□□□□ 0.85
COL9A3-202ENST00000452372 DHPSP49366 369 aaPredicted RBP20.34■□□□□ 0.85
COL9A3-202ENST00000452372 ARSEP51690 589 aa20.34■□□□□ 0.85
COL9A3-202ENST00000452372 IRX4P78413 519 aa20.34■□□□□ 0.85
COL9A3-202ENST00000452372 SERINC3Q13530 473 aa20.34■□□□□ 0.85
COL9A3-202ENST00000452372 KRT81Q14533 505 aa20.34■□□□□ 0.85
COL9A3-202ENST00000452372 SPDYCQ5MJ68 293 aa20.34■□□□□ 0.85
COL9A3-202ENST00000452372 AFMIDQ63HM1 303 aa20.34■□□□□ 0.85
COL9A3-202ENST00000452372 Q6ZVU0 165 aa20.34■□□□□ 0.85
COL9A3-202ENST00000452372 TMEFF1Q8IYR6 380 aa20.34■□□□□ 0.85
COL9A3-202ENST00000452372 LZTR1Q8N653 840 aa20.34■□□□□ 0.85
COL9A3-202ENST00000452372 OR8D1Q8WZ84 308 aa20.34■□□□□ 0.85
COL9A3-202ENST00000452372 SLC39A8Q9C0K1 460 aa20.34■□□□□ 0.85
COL9A3-202ENST00000452372 GRPEL1Q9HAV7 217 aa20.34■□□□□ 0.85
COL9A3-202ENST00000452372 WSB2Q9NYS7 404 aaPredicted RBP20.34■□□□□ 0.85
COL9A3-202ENST00000452372 USP24Q9UPU5 2620 aa20.33■□□□□ 0.85
COL9A3-202ENST00000452372 ALOX15BO15296 676 aa20.33■□□□□ 0.85
COL9A3-202ENST00000452372 ZNF821O75541 412 aaPredicted RBP20.33■□□□□ 0.85
COL9A3-202ENST00000452372 KCNK5O95279 499 aa20.33■□□□□ 0.85
COL9A3-202ENST00000452372 CD6P30203 668 aa20.33■□□□□ 0.85
COL9A3-202ENST00000452372 PDK2Q15119 407 aa20.33■□□□□ 0.85
COL9A3-202ENST00000452372 CST6Q15828 149 aa20.33■□□□□ 0.85
COL9A3-202ENST00000452372 TTC31Q49AM3 519 aaPredicted RBP20.33■□□□□ 0.85
COL9A3-202ENST00000452372 C22orf39Q6P5X5 142 aa20.33■□□□□ 0.85
COL9A3-202ENST00000452372 LPCAT2Q7L5N7 544 aa20.33■□□□□ 0.85
COL9A3-202ENST00000452372 ZNF354CQ86Y25 554 aa20.33■□□□□ 0.85
COL9A3-202ENST00000452372 MMAAQ8IVH4 418 aaKnown RBP20.33■□□□□ 0.85
COL9A3-202ENST00000452372 KCTD6Q8NC69 237 aa20.33■□□□□ 0.85
COL9A3-202ENST00000452372 OR2A12Q8NGT7 310 aa20.33■□□□□ 0.85
COL9A3-202ENST00000452372 PIGKQ92643 395 aa20.33■□□□□ 0.85
COL9A3-202ENST00000452372 ISG20Q96AZ6 181 aaKnown RBP20.33■□□□□ 0.85
COL9A3-202ENST00000452372 CELF6Q96J87 481 aaKnown RBP20.33■□□□□ 0.85
COL9A3-202ENST00000452372 CCDC114Q96M63 670 aa20.33■□□□□ 0.85
COL9A3-202ENST00000452372 EDEM2Q9BV94 578 aa20.33■□□□□ 0.85
COL9A3-202ENST00000452372 ACTL7AQ9Y615 435 aa20.33■□□□□ 0.85
COL9A3-202ENST00000452372 CACNA1EQ15878 2313 aa20.33■□□□□ 0.84
COL9A3-202ENST00000452372 RCCD1A6NED2 376 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 GOLGA6L3A6NEY3 463 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 ARHGAP42A6NI28 874 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 KHNYNO15037 678 aaKnown RBP20.32■□□□□ 0.84
COL9A3-202ENST00000452372 BUB1O43683 1085 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 CD48P09326 243 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 PMLP29590 882 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 SLC8A1P32418 973 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 GJC1P36383 396 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 SFSWAPQ12872 951 aaKnown RBP20.32■□□□□ 0.84
COL9A3-202ENST00000452372 DPYSL3Q14195 570 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 LRRC38Q5VT99 294 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 USP30Q70CQ3 517 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 CYP2U1Q7Z449 544 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 DSG4Q86SJ6 1040 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 MAP7D3Q8IWC1 876 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 ARHGAP12Q8IWW6 846 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 PCDH20Q8N6Y1 951 aaKnown RBP20.32■□□□□ 0.84
COL9A3-202ENST00000452372 NPWQ8N729 165 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 ACRBPQ8NEB7 543 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 CASKIN2Q8WXE0 1202 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 TOE1Q96GM8 510 aaKnown RBP20.32■□□□□ 0.84
COL9A3-202ENST00000452372 PABPC3Q9H361 631 aaKnown RBP20.32■□□□□ 0.84
COL9A3-202ENST00000452372 ETNK2Q9NVF9 386 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 PPM1HQ9ULR3 514 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 FCF1Q9Y324 198 aaKnown RBP20.32■□□□□ 0.84
COL9A3-202ENST00000452372 FARP1Q9Y4F1 1045 aaPredicted RBP20.32■□□□□ 0.84
COL9A3-202ENST00000452372 NUMA1Q14980 2115 aa20.32■□□□□ 0.84
COL9A3-202ENST00000452372 MID1O15344 667 aa20.31■□□□□ 0.84
COL9A3-202ENST00000452372 PJA2O43164 708 aa20.31■□□□□ 0.84
COL9A3-202ENST00000452372 BNIP3LO60238 219 aa20.31■□□□□ 0.84
COL9A3-202ENST00000452372 BUB1BO60566 1050 aaPredicted RBP20.31■□□□□ 0.84
COL9A3-202ENST00000452372 NDUFS2O75306 463 aa20.31■□□□□ 0.84
COL9A3-202ENST00000452372 ADH1BP00325 375 aa20.31■□□□□ 0.84
COL9A3-202ENST00000452372 IL1BP01584 269 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms