RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 HAPLN3Q96S86 360 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 MYOCQ99972 504 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 SLC17A9Q9BYT1 436 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 PIGVQ9NUD9 493 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 NLGN3Q9NZ94 848 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 KIAA1468Q9P260 1216 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 VPS51Q9UID3 782 aa13.59□□□□□ -0.23
HMGB3-204ENST00000448905 FASNP49327 2511 aaKnown RBP13.59□□□□□ -0.23
HMGB3-204ENST00000448905 CELSR3Q9NYQ7 3312 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 A6NNZ2 444 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 H3BM21 787 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 K7ERQ8 282 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 OPA1O60313 960 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 SNAP91O60641 907 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 PIAS2O75928 621 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 PAK4O96013 591 aaPredicted RBP13.58□□□□□ -0.24
HMGB3-204ENST00000448905 RRM1P23921 792 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 SCNN1AP37088 669 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 ETFBP38117 255 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 NEK3P51956 506 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 UCNP55089 124 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 MAPK8IP2Q13387 824 aaPredicted RBP13.58□□□□□ -0.24
HMGB3-204ENST00000448905 TBC1D25Q3MII6 688 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 ALFQ53S48 1182 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 CARD16Q5EG05 197 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 KIAA1161Q6NSJ0 714 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 SLC47A2Q86VL8 602 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 FAM114A1Q8IWE2 563 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 MLKLQ8NB16 471 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 OR13H1Q8NG92 308 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 NT5C3BQ969T7 300 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 GRAMD1AQ96CP6 724 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 LGMNQ99538 433 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 HEPHQ9BQS7 1158 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 CEP44Q9C0F1 390 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 TNKS2Q9H2K2 1166 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 UCKL1Q9NWZ5 548 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 DNAJC28Q9NX36 388 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 CA5BQ9Y2D0 317 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 RAI2Q9Y5P3 530 aa13.58□□□□□ -0.24
HMGB3-204ENST00000448905 A0A0D9SEW6 157 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 NEMP1O14524 444 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 FPGTO14772 594 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 SMAD6O43541 496 aaKnown RBP13.57□□□□□ -0.24
HMGB3-204ENST00000448905 LEFTY1O75610 366 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 ENDOD1O94919 500 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 PRB1P04280 392 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 CTSLP07711 333 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 CLCN1P35523 988 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 GGCXP38435 758 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 RABIFP47224 123 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 IRAK1P51617 712 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 CLDN2P57739 230 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 CCDC173Q0VFZ6 552 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 ARL13BQ3SXY8 428 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 PTPN20Q4JDL3 420 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 FAM102AQ5T9C2 384 aaPredicted RBP13.57□□□□□ -0.24
HMGB3-204ENST00000448905 LINGO4Q6UY18 593 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 DPY19L3Q6ZPD9 716 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 TFAP2DQ7Z6R9 452 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 ABI3BPQ7Z7G0 1075 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 FAM71AQ8IYT1 594 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 PCDH20Q8N6Y1 951 aaKnown RBP13.57□□□□□ -0.24
HMGB3-204ENST00000448905 FAM181AQ8N9Y4 354 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 CHST14Q8NCH0 376 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 TPCN2Q8NHX9 752 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 GRIN3AQ8TCU5 1115 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 GLMNQ92990 594 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 ARRDC3Q96B67 414 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 PSMB7Q99436 277 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 ZYG11BQ9C0D3 744 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 OSBPL2Q9H1P3 480 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 RETREG1Q9H6L5 497 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 ATP13A1Q9HD20 1204 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 MPP6Q9NZW5 540 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 HPCAL4Q9UM19 191 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 CSNK1G3Q9Y6M4 447 aa13.57□□□□□ -0.24
HMGB3-204ENST00000448905 ANKRD11Q6UB99 2663 aaPredicted RBP13.57□□□□□ -0.24
HMGB3-204ENST00000448905 GOLGA4Q13439 2230 aaKnown RBP13.56□□□□□ -0.24
HMGB3-204ENST00000448905 CXorf51AA0A1B0GTR3 108 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 TSPAN6O43657 245 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 AP1G1O43747 822 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 USP12O75317 370 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 CSF2P04141 144 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 ADRB3P13945 408 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 ITGB7P26010 798 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 L1CAMP32004 1257 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 GABRB2P47870 512 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 LSSP48449 732 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 RPIAP49247 311 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 GEMIN4P57678 1058 aaKnown RBP13.56□□□□□ -0.24
HMGB3-204ENST00000448905 PCBP4P57723 403 aaKnown RBP13.56□□□□□ -0.24
HMGB3-204ENST00000448905 ERVPABLB-1P60509 514 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 CXADRP78310 365 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 APBA1Q02410 837 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 C22orf39Q6P5X5 142 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 PTAR1Q7Z6K3 402 aaPredicted RBP13.56□□□□□ -0.24
HMGB3-204ENST00000448905 ZNF605Q86T29 641 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 PLPP6Q8IY26 295 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 MAPK15Q8TD08 544 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms