RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 HORMAD1Q86X24 394 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 XYLT1Q86Y38 959 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 EID2Q8N6I1 236 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 OR2A12Q8NGT7 310 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 ENOX1Q8TC92 643 aaKnown RBP7.23□□□□□ -1.25
VPS41-208ENST00000448833 CASKIN2Q8WXE0 1202 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 TSC1Q92574 1164 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 TBCBQ99426 244 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 SPON2Q9BUD6 331 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 NAA15Q9BXJ9 866 aaKnown RBP7.23□□□□□ -1.25
VPS41-208ENST00000448833 OSBPL1AQ9BXW6 950 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 NRSN2Q9GZP1 204 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 OSBPL2Q9H1P3 480 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 MAGEH1Q9H213 219 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 EBF2Q9HAK2 575 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 USP29Q9HBJ7 922 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 ATP13A1Q9HD20 1204 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 KLHL11Q9NVR0 708 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 OR12D3Q9UGF7 316 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 VPS51Q9UID3 782 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 TMEM59LQ9UK28 342 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 SARDHQ9UL12 918 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 GPSM3Q9Y4H4 160 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 HS3ST3A1Q9Y663 406 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 SLCO1B1Q9Y6L6 691 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 URB1O60287 2271 aaKnown RBP7.23□□□□□ -1.25
VPS41-208ENST00000448833 A0A1W2PQU0 124 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 F8VZ95 297 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 GOLGA6L22H0YM25 854 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 H3BM21 787 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 GOLGA8SH3BPF8 625 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 TAF4O00268 1085 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 TOR1BO14657 336 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 RRP8O43159 456 aaKnown RBP7.22□□□□□ -1.25
VPS41-208ENST00000448833 TSPAN6O43657 245 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 AP1G1O43747 822 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 CNTN5O94779 1100 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 POP4O95707 220 aaKnown RBP7.22□□□□□ -1.25
VPS41-208ENST00000448833 THEGLP0DJG4 465 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 MMP8P22894 467 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 ACP1P24666 158 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 ITGB7P26010 798 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 MAT2AP31153 395 aaKnown RBP7.22□□□□□ -1.25
VPS41-208ENST00000448833 L1CAMP32004 1257 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 ADRA1BP35368 520 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 SOX5P35711 763 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 STAT1P42224 750 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 PTPN9P43378 593 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 NSFP46459 744 aaKnown RBP7.22□□□□□ -1.25
VPS41-208ENST00000448833 SERPINH1P50454 418 aaKnown RBP7.22□□□□□ -1.25
VPS41-208ENST00000448833 SUOXP51687 545 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 NEK3P51956 506 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 AIF1P55008 147 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 HNRNPKP61978 463 aaKnown RBP eCLIP7.22□□□□□ -1.25
VPS41-208ENST00000448833 SNRPD1P62314 119 aaKnown RBP7.22□□□□□ -1.25
VPS41-208ENST00000448833 PPP2CBP62714 309 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 PPP2CAP67775 309 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 NOMO3P69849 1222 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 CDR2Q01850 454 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 GNA12Q03113 381 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 CYP4F3Q08477 520 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 KCNMA1Q12791 1236 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 ALFQ53S48 1182 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 CARD16Q5EG05 197 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 ARSIQ5FYB1 569 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 PIP5KL1Q5T9C9 394 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 SFMBT2Q5VUG0 894 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 TAF3Q5VWG9 929 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 C22orf39Q6P5X5 142 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 LAYNQ6UX15 382 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 LRRC69Q6ZNQ3 347 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 TFAP2DQ7Z6R9 452 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 C14orf80Q86SX3 495 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 NOP9Q86U38 636 aaKnown RBP7.22□□□□□ -1.25
VPS41-208ENST00000448833 GATAD2AQ86YP4 633 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 ZNF683Q8IZ20 524 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 EPS8L1Q8TE68 723 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 BTN2A2Q8WVV5 523 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 ASB12Q8WXK4 309 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 CPA5Q8WXQ8 436 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 BAP1Q92560 729 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 GBP4Q96PP9 640 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 HEPHQ9BQS7 1158 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 DUSP23Q9BVJ7 150 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 C1QTNF7Q9BXJ2 289 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 SLC17A9Q9BYT1 436 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 FHOD1Q9Y613 1164 aa7.22□□□□□ -1.25
VPS41-208ENST00000448833 ZFHX4Q86UP3 3567 aa7.21□□□□□ -1.25
VPS41-208ENST00000448833 ITPR1Q14643 2758 aa7.21□□□□□ -1.25
VPS41-208ENST00000448833 PKD1L2Q7Z442 2459 aa7.21□□□□□ -1.25
VPS41-208ENST00000448833 BPTFQ12830 3046 aa7.21□□□□□ -1.25
VPS41-208ENST00000448833 A0A087WV48 116 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 A0A0D9SEW6 157 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 EIF4E1BA6NMX2 242 aaKnown RBP7.21□□□□□ -1.26
VPS41-208ENST00000448833 A6NNZ2 444 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 NEMP1O14524 444 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 FPGTO14772 594 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 SLC31A1O15431 190 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 LEFTY1O75610 366 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 GFPT2O94808 682 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms