RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 MSLNQ13421 630 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-204ENST00000423058 SLC29A2Q14542 456 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 AP5B1Q2VPB7 878 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 PYHIN1Q6K0P9 492 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 IL27RAQ6UWB1 636 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 TPGS1Q6ZTW0 290 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 CDH24Q86UP0 819 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 USP38Q8NB14 1042 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 LEMD2Q8NC56 503 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 OR10H5Q8NGA6 315 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 PGLYRP2Q96PD5 576 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 TMEM120AQ9BXJ8 343 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 TMEM138Q9NPI0 162 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 SETD4Q9NVD3 440 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 TAGLN3Q9UI15 199 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 CLTCL1P53675 1640 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 CD163L1Q9NR16 1453 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 SPATA31A1Q5TZJ5 1347 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 HOXB6P17509 224 aaKnown RBP6.94□□□□□ -1.3
SCN1A-204ENST00000423058 MYL6P60660 151 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 TSGA10IPQ3SY00 556 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 ULK3Q6PHR2 472 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 SLC26A11Q86WA9 606 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 AMIGO1Q86WK6 493 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 HDDC3Q8N4P3 179 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 RXFP2Q8WXD0 754 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 VPS45Q9NRW7 570 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 SEMA3GQ9NS98 782 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 PCDHGB5Q9Y5G0 923 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 NFASCO94856 1347 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 A0A1W2PQ72 361 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 IGKV5-2P06315 115 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 NR2F1P10589 423 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 CDC25CP30307 473 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 AKT2P31751 481 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 SREBF1P36956 1147 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 RAP1GAPP47736 663 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 CASP4P49662 377 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 STARP49675 285 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 HERVK_113P62684 666 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 TOP3AQ13472 1001 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-204ENST00000423058 CCNIQ14094 377 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 ITFG1Q8TB96 612 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 MYLPFQ96A32 169 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 TBCBQ99426 244 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 COQ7Q99807 217 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 ASB7Q9H672 318 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 TCF7L2Q9NQB0 619 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 GJB4Q9NTQ9 266 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 SMPD4Q9NXE4 827 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 HEY2Q9UBP5 337 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 LDLRP01130 860 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 TAS2R41P59536 307 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 NR1I3Q14994 352 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 OLFML2AQ68BL7 652 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 FBXO22Q8NEZ5 403 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 GRIN3AQ8TCU5 1115 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 TEKT5Q96M29 485 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 MLPHQ9BV36 600 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-204ENST00000423058 SLC4A5Q9BY07 1137 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 BRD9Q9H8M2 597 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 PHTF1Q9UMS5 762 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 MICAL2O94851 1124 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 PGM3O95394 542 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 LCA5LO95447 670 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 TFPIP10646 304 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 NPR3P17342 541 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 TARSP26639 723 aaKnown RBP6.94□□□□□ -1.3
SCN1A-204ENST00000423058 NPTX2P47972 431 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 OTUD4Q01804 1114 aaKnown RBP6.94□□□□□ -1.3
SCN1A-204ENST00000423058 ACVR2BQ13705 512 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 MYBPC2Q14324 1141 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 FAM131BQ86XD5 332 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 DEPDC4Q8N2C3 294 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 CENPSQ8N2Z9 138 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 TESCQ96BS2 214 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 VCPIP1Q96JH7 1222 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 GPER1Q99527 375 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 ZSWIM1Q9BR11 485 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 PDGFDQ9GZP0 370 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-204ENST00000423058 CNGB3Q9NQW8 809 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 EXD2Q9NVH0 621 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 FRMPD1Q5SYB0 1578 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 RAD51CO43502 376 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 LTFP02788 710 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 PON1P27169 355 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-204ENST00000423058 TEX47Q8TBZ9 253 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 UBASH3BQ8TF42 649 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 QKIQ96PU8 341 aaKnown RBP eCLIP6.94□□□□□ -1.37e-7■■■■□ 21.5
SCN1A-204ENST00000423058 FDXACB1Q9BRP7 624 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-204ENST00000423058 ADAM33Q9BZ11 813 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 TRIM2Q9C040 744 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 CROTQ9UKG9 612 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 TBC1D30Q9Y2I9 924 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 UNC13BO14795 1591 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 CLUHO75153 1309 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 KCNQ2O43526 872 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 ARF5P84085 180 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 RASA2Q15283 850 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms