RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 TPSAB1Q15661 275 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 SYCP2LQ5T4T6 812 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 TRIM68Q6AZZ1 485 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 VITQ6UXI7 678 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 LEKR1Q6ZMV7 388 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 CENPUQ71F23 418 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 MFSD6LQ8IWD5 586 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 PDIK1LQ8N165 341 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 NAT8LQ8N9F0 302 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 GDAP1L1Q96MZ0 367 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 KXD1Q9BQD3 176 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 ABCB8Q9NUT2 735 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 AAR2Q9Y312 384 aaKnown RBP17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 KIF26AQ9ULI4 1882 aaPredicted RBP17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 BRWD1Q9NSI6 2320 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 ERI2A8K979 691 aaKnown RBP17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 FAM153BP0C7A2 387 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 PSMC3P17980 439 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 GEMP55040 296 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 CDK16Q00536 496 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 SLC10A7Q0GE19 358 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 SMAD4Q13485 552 aaKnown RBP17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 HIF1AQ16665 826 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 FAM153CQ494X1 144 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 BEND6Q5SZJ8 279 aaPredicted RBP17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 FAM182AQ5T1J6 154 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 ANKRD22Q5VYY1 191 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 RHBDF2Q6PJF5 856 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 METTL3Q86U44 580 aaKnown RBP17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 PPM1EQ8WY54 764 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 ACDQ96AP0 544 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 ZFYVE19Q96K21 471 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 LRRC3BQ96PB8 259 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 POLR1EQ9GZS1 481 aaKnown RBP17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 EBF3Q9H4W6 596 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 UBE2ZQ9H832 354 aaPredicted RBP17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 PDFQ9HBH1 243 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 EIF2B3Q9NR50 452 aaKnown RBP17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 FAM153AQ9UHL3 310 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 VPS51Q9UID3 782 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 SLC25A13Q9UJS0 675 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 GGA2Q9UJY4 613 aa17.43■□□□□ 0.38
CCDC28B-202ENST00000421922 HOXC11O43248 304 aaPredicted RBP17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 ECI2O75521 394 aa17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 TMEM63AO94886 807 aa17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 PABPC1P11940 636 aaKnown RBP17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 ARSAP15289 507 aa17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 GLDCP23378 1020 aa17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 SP100P23497 879 aaPredicted RBP17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 CD70P32970 193 aa17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 HSPA9P38646 679 aaKnown RBP17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 MAGEA6P43360 314 aa17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 GRM2Q14416 872 aa17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 DMC1Q14565 340 aa17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 PLEKHG6Q3KR16 790 aa17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 DNAJC21Q5F1R6 531 aaKnown RBP17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 PITRM1Q5JRX3 1037 aa17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 RNF43Q68DV7 783 aa17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 TEX26Q8N6G2 289 aa17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 NAT16Q8N8M0 369 aa17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 ST13P5Q8NFI4 369 aaPredicted RBP17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 FCRL5Q96RD9 977 aa17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 RBM15Q96T37 977 aaKnown RBP eCLIP17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 LRRC40Q9H9A6 602 aa17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 XAB2Q9HCS7 855 aaKnown RBP17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 DNAJC17Q9NVM6 304 aaKnown RBP17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 ATP8A1Q9Y2Q0 1164 aa17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 MIA3Q5JRA6 1907 aa17.42■□□□□ 0.38
CCDC28B-202ENST00000421922 SNAP91O60641 907 aa17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 PEX11BO96011 259 aa17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 CD68P34810 354 aaPredicted RBP17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 DGKGP49619 791 aa17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 SULT2A1Q06520 285 aa17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 HDXQ7Z353 690 aa17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 TMC3Q7Z5M5 1100 aa17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 APCDD1Q8J025 514 aa17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 AHI1Q8N157 1196 aa17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 CNTD1Q8N815 330 aa17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 PDCD7Q8N8D1 485 aaKnown RBP17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 MCUQ8NE86 351 aa17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 UBLCP1Q8WVY7 318 aaPredicted RBP17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 SUSD6Q92537 303 aa17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 ASIC4Q96FT7 647 aa17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 FSD1LQ9BXM9 530 aa17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 SLC25A51Q9H1U9 297 aa17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 ACBD3Q9H3P7 528 aa17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 SAYSD1Q9NPB0 183 aa17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 CLEC4EQ9ULY5 219 aa17.41■□□□□ 0.38
CCDC28B-202ENST00000421922 TCRBV7S3A2A0A539 114 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 EIF3HO15372 352 aaKnown RBP eCLIP17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 CACNG3O60359 315 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 PPFIA2O75334 1257 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 TMCC1O94876 653 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 AP2A1O95782 977 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 POLR2EP19388 210 aaKnown RBP17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 HLA-FP30511 346 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 GDI1P31150 447 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 PLK1P53350 603 aa17.4■□□□□ 0.38
CCDC28B-202ENST00000421922 PMS2P54278 862 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms