RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 SAMD15Q9P1V8 674 aa6.08□□□□□ -1.44
HMGB3-202ENST00000419110 TBC1D14Q9P2M4 693 aa6.08□□□□□ -1.44
HMGB3-202ENST00000419110 DNMT3BQ9UBC3 853 aaKnown RBP6.08□□□□□ -1.44
HMGB3-202ENST00000419110 UBA2Q9UBT2 640 aaPredicted RBP6.08□□□□□ -1.44
HMGB3-202ENST00000419110 SEPT3Q9UH03 358 aa6.08□□□□□ -1.44
HMGB3-202ENST00000419110 VPS28Q9UK41 221 aa6.08□□□□□ -1.44
HMGB3-202ENST00000419110 CHMP2BQ9UQN3 213 aa6.08□□□□□ -1.44
HMGB3-202ENST00000419110 PRRC2BQ5JSZ5 2229 aaKnown RBP6.08□□□□□ -1.44
HMGB3-202ENST00000419110 CHD7Q9P2D1 2997 aa6.08□□□□□ -1.44
HMGB3-202ENST00000419110 CHD9Q3L8U1 2897 aa6.08□□□□□ -1.44
HMGB3-202ENST00000419110 TRIOBPQ9H2D6 2365 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 CCDC195A0A1B0GUA6 201 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 A0A1W2PPC1 479 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 EPOPA6NHQ4 379 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 E7ESA3 106 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 TRDMT1O14717 391 aaKnown RBP6.07□□□□□ -1.44
HMGB3-202ENST00000419110 SCAMP3O14828 347 aaKnown RBP6.07□□□□□ -1.44
HMGB3-202ENST00000419110 GPR37O15354 613 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 GDF9O60383 454 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 TSPAN3O60637 253 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 MAFKO60675 156 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 PRAMEF11O60813 436 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 PAPLNO95428 1278 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 PRAMEF12O95522 483 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 TTC4O95801 387 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 ADH1CP00326 375 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 JCHAINP01591 159 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 KLKB1P03952 638 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 MLNP12872 115 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 FSHRP23945 695 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 HOXD9P28356 352 aaPredicted RBP6.07□□□□□ -1.44
HMGB3-202ENST00000419110 OAS2P29728 719 aaKnown RBP6.07□□□□□ -1.44
HMGB3-202ENST00000419110 CCR2P41597 374 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 SGSHP51688 502 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 NTHL1P78549 312 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 MPP3Q13368 585 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 SERINC3Q13530 473 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 HNRNPDQ14103 355 aaKnown RBP6.07□□□□□ -1.44
HMGB3-202ENST00000419110 RFTN1Q14699 578 aaPredicted RBP6.07□□□□□ -1.44
HMGB3-202ENST00000419110 SLC14A2Q15849 920 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 KLHL38Q2WGJ6 581 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 TEX44Q53QW1 395 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 PLA2G2CQ5R387 149 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 CEP85LQ5SZL2 805 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 MPP7Q5T2T1 576 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 MARC1Q5VT66 337 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 CASC4Q6P4E1 433 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 TMC5Q6UXY8 1006 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 ARHGAP36Q6ZRI8 547 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 HTR3DQ70Z44 454 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 TAOK1Q7L7X3 1001 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 PID1Q7Z2X4 250 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 BBS7Q8IWZ6 715 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 TP53INP2Q8IXH6 220 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 CFAP52Q8N1V2 620 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 RIBC1Q8N443 379 aaPredicted RBP6.07□□□□□ -1.44
HMGB3-202ENST00000419110 EFHBQ8N7U6 833 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 KIAA1958Q8N8K9 716 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 FBXO36Q8NEA4 188 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 IPMKQ8NFU5 416 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 ZSCAN18Q8TBC5 510 aaPredicted RBP6.07□□□□□ -1.44
HMGB3-202ENST00000419110 DDI1Q8WTU0 396 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 PYROXD1Q8WU10 500 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 LRRN4Q8WUT4 740 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 ARHGEF2Q92974 986 aaKnown RBP6.07□□□□□ -1.44
HMGB3-202ENST00000419110 CFAP36Q96G28 342 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 C9orf72Q96LT7 481 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 TEKT5Q96M29 485 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 IL12RB2Q99665 862 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 TBL1YQ9BQ87 522 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 CCDC77Q9BR77 488 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 NAT9Q9BTE0 207 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 POLR1EQ9GZS1 481 aaKnown RBP6.07□□□□□ -1.44
HMGB3-202ENST00000419110 CENPHQ9H3R5 247 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 NOL6Q9H6R4 1146 aaKnown RBP6.07□□□□□ -1.44
HMGB3-202ENST00000419110 GLOD4Q9HC38 313 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 NT5MQ9NPB1 228 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 VPS45Q9NRW7 570 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 GKN1Q9NS71 199 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 TDP1Q9NUW8 608 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 NDFIP2Q9NV92 336 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 ZNF212Q9UDV6 495 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 AAR2Q9Y312 384 aaKnown RBP6.07□□□□□ -1.44
HMGB3-202ENST00000419110 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.07□□□□□ -1.44
HMGB3-202ENST00000419110 CKAP5Q14008 2032 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 PLXNA2O75051 1894 aa6.07□□□□□ -1.44
HMGB3-202ENST00000419110 TCRBV7S3A2A0A539 114 aa6.06□□□□□ -1.44
HMGB3-202ENST00000419110 HMGB1P1B2RPK0 211 aaPredicted RBP6.06□□□□□ -1.44
HMGB3-202ENST00000419110 CBX4O00257 560 aa6.06□□□□□ -1.44
HMGB3-202ENST00000419110 TP73O15350 636 aa6.06□□□□□ -1.44
HMGB3-202ENST00000419110 ZBTB24O43167 697 aaPredicted RBP6.06□□□□□ -1.44
HMGB3-202ENST00000419110 MOSPD3O75425 235 aa6.06□□□□□ -1.44
HMGB3-202ENST00000419110 SUN1O94901 812 aa6.06□□□□□ -1.44
HMGB3-202ENST00000419110 METTL18O95568 372 aa6.06□□□□□ -1.44
HMGB3-202ENST00000419110 NFATC1O95644 943 aa6.06□□□□□ -1.44
HMGB3-202ENST00000419110 GSTA2P09210 222 aa6.06□□□□□ -1.44
HMGB3-202ENST00000419110 HOXB8P17481 243 aaPredicted RBP6.06□□□□□ -1.44
HMGB3-202ENST00000419110 PGAM1P18669 254 aa6.06□□□□□ -1.44
HMGB3-202ENST00000419110 ACVRL1P37023 503 aa6.06□□□□□ -1.44
HMGB3-202ENST00000419110 CSKP41240 450 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms