RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 HSFX1Q9UBD0 423 aa10.04□□□□□ -0.8
SS18-203ENST00000415083 FBXW11Q9UKB1 542 aa10.04□□□□□ -0.8
SS18-203ENST00000415083 TRIM13O60858 407 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 PGM3O95394 542 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 KCNE1P15382 129 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 NPR3P17342 541 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 TFEBP19484 476 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 WARSP23381 471 aaKnown RBP10.03□□□□□ -0.8
SS18-203ENST00000415083 ALDH1A3P47895 512 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 GALNT2Q10471 571 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 PPIL2Q13356 520 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 EIF4EBP2Q13542 120 aaPredicted RBP10.03□□□□□ -0.8
SS18-203ENST00000415083 ZNF789Q5FWF6 425 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 RASIP1Q5U651 963 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 FSTL5Q8N475 847 aaPredicted RBP10.03□□□□□ -0.8
SS18-203ENST00000415083 STYXQ8WUJ0 223 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 CATSPER2Q96P56 530 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 GBP5Q96PP8 586 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 APBA2Q99767 749 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 PKP2Q99959 881 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 OMDQ99983 421 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 STK39Q9UEW8 545 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 PRSS51A0A1B0GVH4 220 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 MYBPHLA2RUH7 354 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 TMEM114B3SHH9 223 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 PEX1O43933 1283 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 PIGNO95427 931 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 MT-CYBP00156 380 aaPredicted RBP10.03□□□□□ -0.8
SS18-203ENST00000415083 PTPN1P18031 435 aaKnown RBP10.03□□□□□ -0.8
SS18-203ENST00000415083 TKTL1P51854 596 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 DAOAP59103 153 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 MRPS22P82650 360 aaKnown RBP10.03□□□□□ -0.8
SS18-203ENST00000415083 IFRD2Q12894 506 aaPredicted RBP10.03□□□□□ -0.8
SS18-203ENST00000415083 LSAMPQ13449 338 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 RAB41Q5JT25 222 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 CNSTQ6PJW8 725 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 EGFL6Q8IUX8 553 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 SNX31Q8N9S9 440 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 CELF6Q96J87 481 aaKnown RBP10.03□□□□□ -0.8
SS18-203ENST00000415083 PRICKLE1Q96MT3 831 aaPredicted RBP10.03□□□□□ -0.8
SS18-203ENST00000415083 CDRT15Q96T59 188 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 RTP3Q9BQQ7 232 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 PAAF1Q9BRP4 392 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 KLHL8Q9P2G9 620 aaPredicted RBP10.03□□□□□ -0.8
SS18-203ENST00000415083 SLC39A10Q9ULF5 831 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 COPG1Q9Y678 874 aaKnown RBP10.03□□□□□ -0.8
SS18-203ENST00000415083 LAMA2P24043 3122 aaKnown RBP10.03□□□□□ -0.8
SS18-203ENST00000415083 MIA3Q5JRA6 1907 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 C15orf38-AP3S2A0A0A6YYH1 394 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 MBLAC1A4D2B0 266 aaPredicted RBP10.03□□□□□ -0.8
SS18-203ENST00000415083 NEMP2A6NFY4 417 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 ASB14A6NK59 587 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 DENRO43583 198 aaKnown RBP10.03□□□□□ -0.8
SS18-203ENST00000415083 RTN3O95197 1032 aaPredicted RBP10.03□□□□□ -0.8
SS18-203ENST00000415083 CRTAMO95727 393 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 HSPA4LO95757 839 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 GARSP41250 739 aaKnown RBP10.03□□□□□ -0.8
SS18-203ENST00000415083 ACADSBP45954 432 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 NUDT2P50583 147 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 NAGLUP54802 743 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 INHBCP55103 352 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 CFAP157Q5JU67 520 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 CATSPER4Q7RTX7 472 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 ARPINQ7Z6K5 226 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 PELI3Q8N2H9 469 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 PQLC1Q8N2U9 271 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 MARVELD2Q8N4S9 558 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 PPP4R1Q8TF05 950 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 SLCO4A1Q96BD0 722 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 HDAC11Q96DB2 347 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 CDCA5Q96FF9 252 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 NPAS2Q99743 824 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 NAT9Q9BTE0 207 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 SLC2A11Q9BYW1 496 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 C20orf96Q9NUD7 363 aaPredicted RBP10.03□□□□□ -0.8
SS18-203ENST00000415083 MIOSQ9NXC5 875 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 ARHGAP26Q9UNA1 814 aa10.03□□□□□ -0.8
SS18-203ENST00000415083 RNASEH2AO75792 299 aaKnown RBP10.02□□□□□ -0.81
SS18-203ENST00000415083 USP17L7P0C7H9 530 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 SMIM10L2AP0DMW4 78 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 SMIM10L2BP0DMW5 78 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 MX2P20592 715 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 SPRP35270 261 aaPredicted RBP10.02□□□□□ -0.81
SS18-203ENST00000415083 CREB5Q02930 508 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 CTBP1Q13363 440 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 MPP3Q13368 585 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 NOMO2Q5JPE7 1267 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 PRAMEF19Q5SWL8 479 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 ARHGAP12Q8IWW6 846 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 TXNDC5Q8NBS9 432 aaKnown RBP10.02□□□□□ -0.81
SS18-203ENST00000415083 APPL2Q8NEU8 664 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 NPLOC4Q8TAT6 608 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 GRIN3AQ8TCU5 1115 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 NAT14Q8WUY8 206 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 EDEM1Q92611 657 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 NXNL1Q96CM4 212 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 MAELQ96JY0 434 aaKnown RBP10.02□□□□□ -0.81
SS18-203ENST00000415083 VTA1Q9NP79 307 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 UBQLN1Q9UMX0 589 aaKnown RBP10.02□□□□□ -0.81
SS18-203ENST00000415083 PSMD13Q9UNM6 376 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms