RNA–Protein interactions for RNA: ENST00000413582.6

RFFL-203, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 5 BASIC

Gene RFFL, Length 1,217 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-203ENST00000413582 CASC3O15234 703 aaKnown RBP9.79□□□□□ -0.84
RFFL-203ENST00000413582 EFSO43281 561 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 BNIP3LO60238 219 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 TRUB2O95900 331 aaKnown RBP9.79□□□□□ -0.84
RFFL-203ENST00000413582 CSF2P04141 144 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 ITGA2BP08514 1039 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 ZNF18P17022 549 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 NFKB2Q00653 900 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 FGL2Q14314 439 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 DRAP1Q14919 205 aaPredicted RBP9.79□□□□□ -0.84
RFFL-203ENST00000413582 STILQ15468 1287 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 COLEC12Q5KU26 742 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 RABGAP1LQ5R372 815 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 PERM1Q5SV97 790 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 CRTC1Q6UUV9 634 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 PARGQ86W56 976 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 DCP2Q8IU60 420 aaKnown RBP9.79□□□□□ -0.84
RFFL-203ENST00000413582 ARL14Q8N4G2 192 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 WDR36Q8NI36 951 aaKnown RBP9.79□□□□□ -0.84
RFFL-203ENST00000413582 FAM174AQ8TBP5 190 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 KAT5Q92993 513 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 CCDC47Q96A33 483 aaKnown RBP9.79□□□□□ -0.84
RFFL-203ENST00000413582 BMFQ96LC9 184 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 FEM1AQ9BSK4 669 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 STARD5Q9NSY2 213 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 NCKIPSDQ9NZQ3 722 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 KLF15Q9UIH9 416 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 HS3ST2Q9Y278 367 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 CSNK1G3Q9Y6M4 447 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 NOTCH2Q04721 2471 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 SPTBN1Q01082 2364 aaKnown RBP9.79□□□□□ -0.84
RFFL-203ENST00000413582 TEX15Q9BXT5 2789 aa9.79□□□□□ -0.84
RFFL-203ENST00000413582 USP9YO00507 2555 aaPredicted RBP9.78□□□□□ -0.84
RFFL-203ENST00000413582 UNC13CQ8NB66 2214 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 CCDC187A0A096LP49 1063 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 SPTY2D1-AS1A0A0U1RR47 76 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 POM121BA6NF01 834 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 KCNU1A8MYU2 1149 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 H3BM21 787 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 CETN3O15182 167 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 RAD51BO15315 384 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 SLC16A3O15427 465 aaKnown RBP9.78□□□□□ -0.84
RFFL-203ENST00000413582 TNFSF15O95150 251 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 MT-CO1P00395 513 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 SRCP12931 536 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 ITGB6P18564 788 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 CHRNA3P32297 505 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 GPD2P43304 727 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 PNOCQ13519 176 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 DEFB133Q30KQ1 61 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 TPRG1LQ5T0D9 272 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 FBXL22Q6P050 247 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 FOXR1Q6PIV2 292 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 ATG14Q6ZNE5 492 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 ERN2Q76MJ5 926 aaKnown RBP9.78□□□□□ -0.84
RFFL-203ENST00000413582 SMYD4Q8IYR2 804 aaPredicted RBP9.78□□□□□ -0.84
RFFL-203ENST00000413582 ATP6V0D2Q8N8Y2 350 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 TMIEQ8NEW7 156 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 OR2A12Q8NGT7 310 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 TPCN2Q8NHX9 752 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 SLC35C1Q96A29 364 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 RPRD1AQ96P16 312 aaPredicted RBP9.78□□□□□ -0.84
RFFL-203ENST00000413582 PSMB7Q99436 277 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 TRIM62Q9BVG3 475 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 BOCQ9BWV1 1114 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 GTPBP4Q9BZE4 634 aaKnown RBP9.78□□□□□ -0.84
RFFL-203ENST00000413582 ST7Q9NRC1 585 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 WDR70Q9NW82 654 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 SALL4Q9UJQ4 1053 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 VPS28Q9UK41 221 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 PCDHB4Q9Y5E5 795 aa9.78□□□□□ -0.84
RFFL-203ENST00000413582 K7ERQ8 282 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 TPP1O14773 563 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 MUSKO15146 869 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 SPINT1O43278 529 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 AQP9O43315 295 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 SNAP91O60641 907 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 PCDH8O95206 1070 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 PRNPP04156 253 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 JUNDP17535 347 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 GGCXP38435 758 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 CCDC15Q0P6D6 951 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 SRSF6Q13247 344 aaKnown RBP9.77□□□□□ -0.85
RFFL-203ENST00000413582 NR0B2Q15466 257 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 XKR5Q6UX68 686 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 SLC35F3Q8IY50 421 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 PPM1KQ8N3J5 372 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 CHST14Q8NCH0 376 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 SPATA20Q8TB22 786 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 GRIN3AQ8TCU5 1115 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 EXTL1Q92935 676 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 RNF34Q969K3 372 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 LIN37Q96GY3 246 aaPredicted RBP9.77□□□□□ -0.85
RFFL-203ENST00000413582 CCDC114Q96M63 670 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 NT5C1BQ96P26 610 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 PPP1R9BQ96SB3 815 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 SLC4A5Q9BY07 1137 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 HDAC8Q9BY41 377 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 FAM204AQ9H8W3 233 aa9.77□□□□□ -0.85
RFFL-203ENST00000413582 POPDC2Q9HBU9 364 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms