RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 NPTX2P47972 431 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 MADCAM1Q13477 382 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 ARMC6Q6NXE6 501 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 TUBA3EQ6PEY2 450 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 PWWP2AQ96N64 755 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 TMEM216Q9P0N5 145 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 A0A087WZ62 844 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 CCNE2O96020 404 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 HPCAL1P37235 193 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 PTPN5P54829 565 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 HPS6Q86YV9 775 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 DCP1BQ8IZD4 617 aaKnown RBP11.99□□□□□ -0.49
SYNPO-202ENST00000394243 ADGRE3Q9BY15 652 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 TTYH1Q9H313 450 aaPredicted RBP11.99□□□□□ -0.49
SYNPO-202ENST00000394243 ALG9Q9H6U8 611 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 SYNDIG1Q9H7V2 258 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 CCNB1IP1Q9NPC3 277 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 ETNK2Q9NVF9 386 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 NKIRAS2Q9NYR9 191 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 WDR37Q9Y2I8 494 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 TRIM64CA6NLI5 447 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 NTRK1P04629 796 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 IFI30P13284 250 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 PNPLA4P41247 253 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 SLITRK1Q96PX8 696 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 TSPAN18Q96SJ8 248 aa11.99□□□□□ -0.49
SYNPO-202ENST00000394243 STN1Q9H668 368 aaKnown RBP11.99□□□□□ -0.49
SYNPO-202ENST00000394243 SAMHD1Q9Y3Z3 626 aaKnown RBP11.99□□□□□ -0.49
SYNPO-202ENST00000394243 TP73O15350 636 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 C9P02748 559 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 ABHD2P08910 425 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 COX7A2P14406 83 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 MIB1Q86YT6 1006 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 SYTL5Q8TDW5 730 aaPredicted RBP11.98□□□□□ -0.49
SYNPO-202ENST00000394243 RTKNQ9BST9 563 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 TRPM5Q9NZQ8 1165 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 MORF4L1Q9UBU8 362 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 ARAP3Q8WWN8 1544 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 RCCD1A6NED2 376 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 KCNK1O00180 336 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 PRRG1O14668 218 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 CCR1P32246 355 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 SLC11A2P49281 568 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 HMGCS2P54868 508 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 BNIP1Q12981 228 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 DUPD1Q68J44 220 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 ZNF549Q6P9A3 640 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 PACS1Q6VY07 963 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 NUDT18Q6ZVK8 323 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 GPSM1Q86YR5 675 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 SLC4A9Q96Q91 983 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 ATXN3LQ9H3M9 355 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 FAM172BPA6NC97 362 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 LYPLA1O75608 230 aaPredicted RBP11.98□□□□□ -0.49
SYNPO-202ENST00000394243 CCNFP41002 786 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 KCNA10Q16322 511 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 KCNT2Q6UVM3 1135 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 CLNKQ7Z7G1 428 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 PJA1Q8NG27 643 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 ZNF606Q8WXB4 792 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 GMCL1Q96IK5 515 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 MED28Q9H204 178 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 LNPEPQ9UIQ6 1025 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 A0A1W2PPM1 405 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 NOTOA8MTQ0 251 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 DDX3YO15523 660 aaKnown RBP11.98□□□□□ -0.49
SYNPO-202ENST00000394243 TCEA3O75764 348 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 TSPAN8P19075 237 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 PHC1P78364 1004 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 PTPN11Q06124 597 aaPredicted RBP11.98□□□□□ -0.49
SYNPO-202ENST00000394243 FAM20CQ8IXL6 584 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 KATNAL2Q8IYT4 538 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 SMYD1Q8NB12 490 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 SLC47A1Q96FL8 570 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 SERAC1Q96JX3 654 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 GFM1Q96RP9 751 aaKnown RBP11.98□□□□□ -0.49
SYNPO-202ENST00000394243 DENND2DQ9H6A0 471 aaPredicted RBP11.98□□□□□ -0.49
SYNPO-202ENST00000394243 SLC35C2Q9NQQ7 365 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 UGGT1Q9NYU2 1555 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 CASKO14936 926 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 UMPSP11172 480 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 OXCT1P55809 520 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 RBBP4Q09028 425 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 EIF2B5Q13144 721 aaKnown RBP11.98□□□□□ -0.49
SYNPO-202ENST00000394243 MAPKAPK3Q16644 382 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 CA9Q16790 459 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 FAM182BQ5T319 152 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 TDRD10Q5VZ19 366 aaKnown RBP11.98□□□□□ -0.49
SYNPO-202ENST00000394243 PDPRQ8NCN5 879 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 TBL1YQ9BQ87 522 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 AHSPQ9NZD4 102 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 HMGCRP04035 888 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 FMO4P31512 558 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 TNFAIP8L3Q5GJ75 292 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 C10orf107Q8IVU9 208 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 POMGNT2Q8NAT1 580 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 RBM15BQ8NDT2 890 aaKnown RBP11.98□□□□□ -0.49
SYNPO-202ENST00000394243 TRPV1Q8NER1 839 aa11.98□□□□□ -0.49
SYNPO-202ENST00000394243 ZNF512BQ96KM6 892 aaPredicted RBP11.98□□□□□ -0.49
SYNPO-202ENST00000394243 TDRD1Q9BXT4 1180 aaKnown RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms