RNA–Protein interactions for RNA: ENST00000393408.7

CBX1-202, Transcript of chromobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX1, Length 2,422 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1-202ENST00000393408 CHN2P52757 468 aa19.15■□□□□ 0.66
CBX1-202ENST00000393408 THOP1P52888 689 aa19.15■□□□□ 0.66
CBX1-202ENST00000393408 PGGT1BP53609 377 aa19.15■□□□□ 0.66
CBX1-202ENST00000393408 NSUN2Q08J23 767 aaKnown RBP eCLIP19.15■□□□□ 0.66
CBX1-202ENST00000393408 CDH17Q12864 832 aa19.15■□□□□ 0.66
CBX1-202ENST00000393408 SNAPC2Q13487 334 aa19.15■□□□□ 0.66
CBX1-202ENST00000393408 SNX17Q15036 470 aa19.15■□□□□ 0.66
CBX1-202ENST00000393408 ZNF423Q2M1K9 1284 aa19.15■□□□□ 0.66
CBX1-202ENST00000393408 PIGGQ5H8A4 983 aa19.15■□□□□ 0.66
CBX1-202ENST00000393408 BNC2Q6ZN30 1099 aaPredicted RBP19.15■□□□□ 0.66
CBX1-202ENST00000393408 GTF3C2Q8WUA4 911 aaPredicted RBP19.15■□□□□ 0.66
CBX1-202ENST00000393408 SGIP1Q9BQI5 828 aa19.15■□□□□ 0.66
CBX1-202ENST00000393408 KIFC1Q9BW19 673 aa19.15■□□□□ 0.66
CBX1-202ENST00000393408 NUF2Q9BZD4 464 aa19.15■□□□□ 0.66
CBX1-202ENST00000393408 CRTAC1Q9NQ79 661 aa19.15■□□□□ 0.66
CBX1-202ENST00000393408 DDIT4Q9NX09 232 aa19.15■□□□□ 0.66
CBX1-202ENST00000393408 G3BP2Q9UN86 482 aaKnown RBP19.15■□□□□ 0.66
CBX1-202ENST00000393408 SNX10Q9Y5X0 201 aa19.15■□□□□ 0.66
CBX1-202ENST00000393408 TARM1B6A8C7 271 aa19.14■□□□□ 0.66
CBX1-202ENST00000393408 SLC35E2BP0CK96 405 aa19.14■□□□□ 0.66
CBX1-202ENST00000393408 NCAM1P13591 858 aa19.14■□□□□ 0.66
CBX1-202ENST00000393408 NAGLUP54802 743 aa19.14■□□□□ 0.66
CBX1-202ENST00000393408 INHBEP58166 350 aa19.14■□□□□ 0.66
CBX1-202ENST00000393408 CYLC2Q14093 348 aaPredicted RBP19.14■□□□□ 0.66
CBX1-202ENST00000393408 USP10Q14694 798 aaKnown RBP19.14■□□□□ 0.66
CBX1-202ENST00000393408 GPRIN1Q7Z2K8 1008 aa19.14■□□□□ 0.66
CBX1-202ENST00000393408 TMC7Q7Z402 723 aa19.14■□□□□ 0.66
CBX1-202ENST00000393408 SETD3Q86TU7 594 aaPredicted RBP19.14■□□□□ 0.66
CBX1-202ENST00000393408 LCA5Q86VQ0 697 aa19.14■□□□□ 0.66
CBX1-202ENST00000393408 LSMEM2Q8N112 164 aa19.14■□□□□ 0.66
CBX1-202ENST00000393408 PIP4K2CQ8TBX8 421 aa19.14■□□□□ 0.66
CBX1-202ENST00000393408 KCTD4Q8WVF5 259 aa19.14■□□□□ 0.66
CBX1-202ENST00000393408 TSNARE1Q96NA8 513 aa19.14■□□□□ 0.66
CBX1-202ENST00000393408 GCNAQ96QF7 691 aa19.14■□□□□ 0.66
CBX1-202ENST00000393408 CDRT15Q96T59 188 aa19.14■□□□□ 0.66
CBX1-202ENST00000393408 SMOQ99835 787 aa19.14■□□□□ 0.66
CBX1-202ENST00000393408 DMAP1Q9NPF5 467 aaPredicted RBP19.14■□□□□ 0.66
CBX1-202ENST00000393408 VTI1BQ9UEU0 232 aa19.14■□□□□ 0.66
CBX1-202ENST00000393408 RUVBL2Q9Y230 463 aaKnown RBP19.14■□□□□ 0.66
CBX1-202ENST00000393408 IPPQ9Y573 584 aa19.14■□□□□ 0.66
CBX1-202ENST00000393408 TXNDC9O14530 226 aa19.14■□□□□ 0.65
CBX1-202ENST00000393408 DDHD2O94830 711 aa19.14■□□□□ 0.65
CBX1-202ENST00000393408 JCHAINP01591 159 aa19.14■□□□□ 0.65
CBX1-202ENST00000393408 SAT1P21673 171 aa19.14■□□□□ 0.65
CBX1-202ENST00000393408 IGFBP6P24592 240 aaPredicted RBP19.14■□□□□ 0.65
CBX1-202ENST00000393408 LRPAP1P30533 357 aa19.14■□□□□ 0.65
CBX1-202ENST00000393408 ADSLP30566 484 aaPredicted RBP19.14■□□□□ 0.65
CBX1-202ENST00000393408 GLRBP48167 497 aa19.14■□□□□ 0.65
CBX1-202ENST00000393408 ARL13BQ3SXY8 428 aa19.14■□□□□ 0.65
CBX1-202ENST00000393408 NAPEPLDQ6IQ20 393 aa19.14■□□□□ 0.65
CBX1-202ENST00000393408 CENPLQ8N0S6 344 aaPredicted RBP19.14■□□□□ 0.65
CBX1-202ENST00000393408 SMG8Q8ND04 991 aaKnown RBP19.14■□□□□ 0.65
CBX1-202ENST00000393408 DNAJB3Q8WWF6 145 aa19.14■□□□□ 0.65
CBX1-202ENST00000393408 RCN3Q96D15 328 aa19.14■□□□□ 0.65
CBX1-202ENST00000393408 DCUN1D1Q96GG9 259 aa19.14■□□□□ 0.65
CBX1-202ENST00000393408 SCYL1Q96KG9 808 aa19.14■□□□□ 0.65
CBX1-202ENST00000393408 CNGB3Q9NQW8 809 aa19.14■□□□□ 0.65
CBX1-202ENST00000393408 SLC4A7Q9Y6M7 1214 aa19.14■□□□□ 0.65
CBX1-202ENST00000393408 CCDC78A2IDD5 438 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 SLCO1B7G3V0H7 640 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 AP3B1O00203 1094 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 XRCC1P18887 633 aaPredicted RBP19.13■□□□□ 0.65
CBX1-202ENST00000393408 GABRB3P28472 473 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 SLC12A1Q13621 1099 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 HERC3Q15034 1050 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 KLHDC8BQ8IXV7 354 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 FSTL5Q8N475 847 aaPredicted RBP19.13■□□□□ 0.65
CBX1-202ENST00000393408 COLEC11Q9BWP8 271 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 CDYLQ9Y232 598 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 DENRO43583 198 aaKnown RBP19.13■□□□□ 0.65
CBX1-202ENST00000393408 STRNO43815 780 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 JUNP05412 331 aaKnown RBP19.13■□□□□ 0.65
CBX1-202ENST00000393408 FAM163BP0C2L3 166 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 USP17L7P0C7H9 530 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 YBX3P16989 372 aaKnown RBP eCLIP19.13■□□□□ 0.65
CBX1-202ENST00000393408 DNAJB2P25686 324 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 AVPR1AP37288 418 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 FLOT2Q14254 428 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 PRPSAP1Q14558 356 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 TLR1Q15399 786 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 RAB41Q5JT25 222 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 TMEM198Q66K66 360 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 CTU1Q7Z7A3 348 aaKnown RBP19.13■□□□□ 0.65
CBX1-202ENST00000393408 PGAM4Q8N0Y7 254 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 MARVELD2Q8N4S9 558 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 CNTD1Q8N815 330 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 ZMIZ2Q8NF64 920 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 CATSPER2Q96P56 530 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 EPAS1Q99814 870 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 TMEM30AQ9NV96 361 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 OR12D3Q9UGF7 316 aa19.13■□□□□ 0.65
CBX1-202ENST00000393408 C15orf38-AP3S2A0A0A6YYH1 394 aa19.12■□□□□ 0.65
CBX1-202ENST00000393408 PTGESO14684 152 aa19.12■□□□□ 0.65
CBX1-202ENST00000393408 AP1G2O75843 785 aa19.12■□□□□ 0.65
CBX1-202ENST00000393408 AHSGP02765 367 aa19.12■□□□□ 0.65
CBX1-202ENST00000393408 MYCNP04198 464 aaPredicted RBP19.12■□□□□ 0.65
CBX1-202ENST00000393408 COL6A2P12110 1019 aa19.12■□□□□ 0.65
CBX1-202ENST00000393408 DNAJB1P25685 340 aa19.12■□□□□ 0.65
CBX1-202ENST00000393408 PPP2R5DQ14738 602 aa19.12■□□□□ 0.65
CBX1-202ENST00000393408 LRRC8EQ6NSJ5 796 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms