RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 DMAP1Q9NPF5 467 aaPredicted RBP9.81□□□□□ -0.84
COL6A3-204ENST00000392003 DSEQ9UL01 958 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 PSAT1Q9Y617 370 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 NUMBLQ9Y6R0 609 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 FAM155AB1AL88 458 aaPredicted RBP9.81□□□□□ -0.84
COL6A3-204ENST00000392003 KLHL2O95198 593 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 CHRNA1P02708 482 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 MPOP05164 745 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 DNAJB2P25686 324 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 CYP2C18P33260 490 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 CXCR3P49682 368 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 TSPY1Q01534 308 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 MUM1Q2TAK8 710 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 RAB41Q5JT25 222 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 CCSAPQ6IQ19 270 aaPredicted RBP9.81□□□□□ -0.84
COL6A3-204ENST00000392003 SERINC5Q86VE9 423 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 PPFIBP2Q8ND30 876 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 ZMIZ2Q8NF64 920 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 FAM193BQ96PV7 902 aaPredicted RBP9.81□□□□□ -0.84
COL6A3-204ENST00000392003 RBBP8Q99708 897 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 APOL2Q9BQE5 337 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 IL22Q9GZX6 179 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 CASS4Q9NQ75 786 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 SNX15Q9NRS6 342 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 TRMT13Q9NUP7 481 aaKnown RBP9.81□□□□□ -0.84
COL6A3-204ENST00000392003 NSMCE4AQ9NXX6 385 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 IL1RAPL1Q9NZN1 696 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 TLK1Q9UKI8 766 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 HSPA4LO95757 839 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 LIMK2P53671 638 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 CSE1LP55060 971 aaKnown RBP9.81□□□□□ -0.84
COL6A3-204ENST00000392003 GALNT2Q10471 571 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 CDH17Q12864 832 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 SEMA3BQ13214 749 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 MAPRE1Q15691 268 aaKnown RBP9.81□□□□□ -0.84
COL6A3-204ENST00000392003 TIGD5Q53EQ6 642 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 HSP90AA5PQ58FG0 334 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 RAPH1Q70E73 1250 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 LMNTD2Q8IXW0 634 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 SIX5Q8N196 739 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 ENDOVQ8N8Q3 282 aaKnown RBP9.81□□□□□ -0.84
COL6A3-204ENST00000392003 CELF6Q96J87 481 aaKnown RBP9.81□□□□□ -0.84
COL6A3-204ENST00000392003 MIOSQ9NXC5 875 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 RNF186Q9NXI6 227 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 E2F8A0AVK6 867 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 DFFAO00273 331 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 LYPLA1O75608 230 aaPredicted RBP9.8□□□□□ -0.84
COL6A3-204ENST00000392003 LRIG2O94898 1065 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 PROCP04070 461 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 KPNB1Q14974 876 aaKnown RBP9.8□□□□□ -0.84
COL6A3-204ENST00000392003 PPM1JQ5JR12 505 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 TEDDM1Q5T9Z0 273 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 BTBD8Q5XKL5 378 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 MBLAC2Q68D91 279 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 ANO7Q6IWH7 933 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 RFWD3Q6PCD5 774 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 KCNMB4Q86W47 210 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 C10orf107Q8IVU9 208 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 CACTIN-AS1Q8N1I8 211 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 CD99L2Q8TCZ2 262 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 ABHD8Q96I13 439 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 ACBD6Q9BR61 282 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 ARHGEF38Q9NXL2 777 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 TMEM216Q9P0N5 145 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 COPG2Q9UBF2 871 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 ZNF236Q9UL36 1845 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 A0A096LPK6 155 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 FGF3P11487 239 aaPredicted RBP9.8□□□□□ -0.84
COL6A3-204ENST00000392003 IGFBP6P24592 240 aaPredicted RBP9.8□□□□□ -0.84
COL6A3-204ENST00000392003 HOXC8P31273 242 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 CCNG1P51959 295 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 ABCE1P61221 599 aaKnown RBP9.8□□□□□ -0.84
COL6A3-204ENST00000392003 PHEXP78562 749 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 CAMK2BQ13554 666 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 ITGA9Q13797 1035 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 CERCAMQ5T4B2 595 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 GLB1LQ6UWU2 654 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 AGMOQ6ZNB7 445 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 CMC1Q7Z7K0 106 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 TAC4Q86UU9 113 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 ATPAF2Q8N5M1 289 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 GSTCDQ8NEC7 633 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 DTNBP1Q96EV8 351 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 TEKT5Q96M29 485 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 FCRL3Q96P31 734 aaPredicted RBP9.8□□□□□ -0.84
COL6A3-204ENST00000392003 SENP6Q9GZR1 1112 aaPredicted RBP9.8□□□□□ -0.84
COL6A3-204ENST00000392003 IARS2Q9NSE4 1012 aaKnown RBP9.8□□□□□ -0.84
COL6A3-204ENST00000392003 UBP1Q9NZI7 540 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 AAR2Q9Y312 384 aaKnown RBP9.8□□□□□ -0.84
COL6A3-204ENST00000392003 SNX10Q9Y5X0 201 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 MAGEB3O15480 346 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 TPH1P17752 444 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 HADHAP40939 763 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 AFF1P51825 1210 aaKnown RBP9.8□□□□□ -0.84
COL6A3-204ENST00000392003 CACNA2D1P54289 1103 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 OLIG2Q13516 323 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 PCLAFQ15004 111 aa9.8□□□□□ -0.84
COL6A3-204ENST00000392003 KHDC1Q4VXA5 237 aaKnown RBP9.8□□□□□ -0.84
COL6A3-204ENST00000392003 CTU1Q7Z7A3 348 aaKnown RBP9.8□□□□□ -0.84
COL6A3-204ENST00000392003 TMEM135Q86UB9 458 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms