RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 PABPC5Q96DU9 382 aaKnown RBP25.61■■□□□ 1.69
SHOX2-201ENST00000389589 IMP4Q96G21 291 aaKnown RBP25.61■■□□□ 1.69
SHOX2-201ENST00000389589 PHTF1Q9UMS5 762 aa25.61■■□□□ 1.69
SHOX2-201ENST00000389589 ARL2BPQ9Y2Y0 163 aa25.61■■□□□ 1.69
SHOX2-201ENST00000389589 CRHR1P34998 444 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 PLD1Q13393 1074 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 FAM133BQ5BKY9 247 aaKnown RBP25.6■■□□□ 1.69
SHOX2-201ENST00000389589 DENND5AQ6IQ26 1287 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 FAM47EQ6ZV65 393 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 CIR1Q86X95 450 aaPredicted RBP25.6■■□□□ 1.69
SHOX2-201ENST00000389589 NDUFAF2Q8N183 169 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 MFSD3Q96ES6 412 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 MRGPRX2Q96LB1 330 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 NT5MQ9NPB1 228 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 PSAT1Q9Y617 370 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 CCT8L1PA6NM43 557 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 EDF1O60869 148 aaKnown RBP25.6■■□□□ 1.69
SHOX2-201ENST00000389589 PMPCBO75439 489 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 ITGA2BP08514 1039 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 EPHB3P54753 998 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 SLC10A7Q0GE19 358 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 PKN3Q6P5Z2 889 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 RANBP10Q6VN20 620 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 PPHLN1Q8NEY8 458 aaKnown RBP25.6■■□□□ 1.69
SHOX2-201ENST00000389589 C12orf65Q9H3J6 166 aaKnown RBP25.6■■□□□ 1.69
SHOX2-201ENST00000389589 KDM4CQ9H3R0 1056 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 MRM3Q9HC36 420 aaKnown RBP25.6■■□□□ 1.69
SHOX2-201ENST00000389589 SLC17A6Q9P2U8 582 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 PCDHB12Q9Y5F1 795 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 PLXNA4Q9HCM2 1894 aa25.6■■□□□ 1.69
SHOX2-201ENST00000389589 MYLKQ15746 1914 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 SLC6A4P31645 630 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 SPRP35270 261 aaPredicted RBP25.59■■□□□ 1.69
SHOX2-201ENST00000389589 TWF1Q12792 350 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 PDPK2PQ6A1A2 396 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 KCNMB4Q86W47 210 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 SPOCK2Q92563 424 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 MYEOVQ96EZ4 313 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 MANSC1Q9H8J5 431 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 PCMTD2Q9NV79 361 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 NSMCE4AQ9NXX6 385 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 ACRP10323 421 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 CDH4P55283 916 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 STXBP5Q5T5C0 1151 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 TEDDM1Q5T9Z0 273 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 CGB2Q6NT52 195 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 KDELC1Q6UW63 502 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 SLC13A1Q9BZW2 595 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 MAGEH1Q9H213 219 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 IL23AQ9NPF7 189 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 C20orf96Q9NUD7 363 aaPredicted RBP25.59■■□□□ 1.69
SHOX2-201ENST00000389589 PRKAG3Q9UGI9 489 aa25.59■■□□□ 1.69
SHOX2-201ENST00000389589 KIAA0100Q14667 2235 aaKnown RBP25.58■■□□□ 1.69
SHOX2-201ENST00000389589 STC2O76061 302 aa25.58■■□□□ 1.69
SHOX2-201ENST00000389589 NMBRP28336 390 aa25.58■■□□□ 1.69
SHOX2-201ENST00000389589 WNT3AP56704 352 aa25.58■■□□□ 1.69
SHOX2-201ENST00000389589 PDE1BQ01064 536 aa25.58■■□□□ 1.69
SHOX2-201ENST00000389589 ITKQ08881 620 aa25.58■■□□□ 1.69
SHOX2-201ENST00000389589 CDHR3Q6ZTQ4 885 aa25.58■■□□□ 1.69
SHOX2-201ENST00000389589 DNAJB7Q7Z6W7 309 aaPredicted RBP25.58■■□□□ 1.69
SHOX2-201ENST00000389589 DENND1CQ8IV53 801 aa25.58■■□□□ 1.69
SHOX2-201ENST00000389589 CCT6BQ92526 530 aa25.58■■□□□ 1.69
SHOX2-201ENST00000389589 ZNF599Q96NL3 588 aa25.58■■□□□ 1.69
SHOX2-201ENST00000389589 KLHL5Q96PQ7 755 aa25.58■■□□□ 1.69
SHOX2-201ENST00000389589 RBBP8Q99708 897 aa25.58■■□□□ 1.69
SHOX2-201ENST00000389589 ARNT2Q9HBZ2 717 aa25.58■■□□□ 1.69
SHOX2-201ENST00000389589 IL1RAPL1Q9NZN1 696 aa25.58■■□□□ 1.69
SHOX2-201ENST00000389589 SSX2IPQ9Y2D8 614 aa25.58■■□□□ 1.69
SHOX2-201ENST00000389589 INSL5Q9Y5Q6 135 aa25.58■■□□□ 1.69
SHOX2-201ENST00000389589 OBSL1O75147 1896 aa25.58■■□□□ 1.68
SHOX2-201ENST00000389589 WDR91A4D1P6 747 aa25.57■■□□□ 1.68
SHOX2-201ENST00000389589 PRAMEF11O60813 436 aa25.57■■□□□ 1.68
SHOX2-201ENST00000389589 SERPINB4P48594 390 aa25.57■■□□□ 1.68
SHOX2-201ENST00000389589 CSE1LP55060 971 aaKnown RBP25.57■■□□□ 1.68
SHOX2-201ENST00000389589 HSP90AA5PQ58FG0 334 aa25.57■■□□□ 1.68
SHOX2-201ENST00000389589 TMCO4Q5TGY1 634 aa25.57■■□□□ 1.68
SHOX2-201ENST00000389589 RFWD3Q6PCD5 774 aa25.57■■□□□ 1.68
SHOX2-201ENST00000389589 ITIH5Q86UX2 942 aa25.57■■□□□ 1.68
SHOX2-201ENST00000389589 TRIM42Q8IWZ5 723 aa25.57■■□□□ 1.68
SHOX2-201ENST00000389589 ATP2A3Q93084 1043 aa25.57■■□□□ 1.68
SHOX2-201ENST00000389589 DDX50Q9BQ39 737 aaKnown RBP25.57■■□□□ 1.68
SHOX2-201ENST00000389589 KLF16Q9BXK1 252 aaPredicted RBP25.57■■□□□ 1.68
SHOX2-201ENST00000389589 ANKRD65E5RJM6 399 aa25.57■■□□□ 1.68
SHOX2-201ENST00000389589 MYO1CO00159 1063 aa25.57■■□□□ 1.68
SHOX2-201ENST00000389589 ALDOAP04075 364 aaKnown RBP25.57■■□□□ 1.68
SHOX2-201ENST00000389589 CORO1AP31146 461 aaKnown RBP25.57■■□□□ 1.68
SHOX2-201ENST00000389589 LBRQ14739 615 aaKnown RBP25.57■■□□□ 1.68
SHOX2-201ENST00000389589 STRA8Q7Z7C7 330 aa25.57■■□□□ 1.68
SHOX2-201ENST00000389589 AUTS2Q8WXX7 1259 aa25.57■■□□□ 1.68
SHOX2-201ENST00000389589 SLCO1B3Q9NPD5 702 aa25.57■■□□□ 1.68
SHOX2-201ENST00000389589 HAUS2Q9NVX0 235 aa25.57■■□□□ 1.68
SHOX2-201ENST00000389589 KLHL14Q9P2G3 628 aa25.57■■□□□ 1.68
SHOX2-201ENST00000389589 ZFP37Q9Y6Q3 630 aaPredicted RBP25.57■■□□□ 1.68
SHOX2-201ENST00000389589 CLDN11O75508 207 aa25.56■■□□□ 1.68
SHOX2-201ENST00000389589 SF3A3Q12874 501 aaKnown RBP eCLIP25.56■■□□□ 1.68
SHOX2-201ENST00000389589 POU6F1Q14863 301 aa25.56■■□□□ 1.68
SHOX2-201ENST00000389589 TRPM8Q7Z2W7 1104 aa25.56■■□□□ 1.68
SHOX2-201ENST00000389589 CFAP52Q8N1V2 620 aa25.56■■□□□ 1.68
SHOX2-201ENST00000389589 PRKD2Q9BZL6 878 aa25.56■■□□□ 1.68
SHOX2-201ENST00000389589 RXFP1Q9HBX9 757 aa25.56■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms