RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 SLC25A51Q9H1U9 297 aa14.02□□□□□ -0.16
PTPRF-202ENST00000372405 IL1RAPL1Q9NZN1 696 aa14.02□□□□□ -0.16
PTPRF-202ENST00000372405 MUSKO15146 869 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 SPAG7O75391 227 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 PMPCBO75439 489 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 CLDN11O75508 207 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 RFPL2O75678 378 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 GJB3O75712 270 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 ANXA9O76027 345 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 GLDCP23378 1020 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 CDH17Q12864 832 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 CXorf57Q6NSI4 855 aaKnown RBP14.02□□□□□ -0.17
PTPRF-202ENST00000372405 KDELC1Q6UW63 502 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 TMEM135Q86UB9 458 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 CCNJLQ8IV13 435 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 CORO1BQ9BR76 489 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 NAT9Q9BTE0 207 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 FICDQ9BVA6 458 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 EPN3Q9H201 632 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 MAGEH1Q9H213 219 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 RETREG1Q9H6L5 497 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 MLXIPLQ9NP71 852 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 KCNK9Q9NPC2 374 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 PPANQ9NQ55 473 aaKnown RBP14.02□□□□□ -0.17
PTPRF-202ENST00000372405 INTS9Q9NV88 658 aaKnown RBP14.02□□□□□ -0.17
PTPRF-202ENST00000372405 BFARQ9NZS9 450 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 RPS6KL1Q9Y6S9 549 aa14.02□□□□□ -0.17
PTPRF-202ENST00000372405 CEP290O15078 2479 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 ZCWPW2A0A1B0GU75 182 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 A0A1B0GVM2 712 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 HMX2A2RU54 273 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 TCAF2A6NFQ2 919 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 PSMD3O43242 534 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 ATP9BO43861 1147 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 LATS1O95835 1130 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 INHBAP08476 426 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 ETFBP38117 255 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 GEMP55040 296 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 DSC2Q02487 901 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 LRRC14Q15048 493 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 SMAD1Q15797 465 aaKnown RBP14.01□□□□□ -0.17
PTPRF-202ENST00000372405 RANBP10Q6VN20 620 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 SH2D5Q6ZV89 423 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 CHST9Q7L1S5 443 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 ZNF771Q7L3S4 317 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-202ENST00000372405 LINC00523Q86TU6 105 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 ANKRD42Q8N9B4 389 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 ARRDC2Q8TBH0 407 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 MGARPQ8TDB4 240 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 MRPS31Q92665 395 aaKnown RBP14.01□□□□□ -0.17
PTPRF-202ENST00000372405 TTC17Q96AE7 1141 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 TADA1Q96BN2 335 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 MFSD3Q96ES6 412 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 SERAC1Q96JX3 654 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 ATXN3LQ9H3M9 355 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 CHRAC1Q9NRG0 131 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 ZNF180Q9UJW8 692 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 TBC1D30Q9Y2I9 924 aa14.01□□□□□ -0.17
PTPRF-202ENST00000372405 TYROBPO43914 113 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 MYL4P12829 197 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 KRT4P19013 534 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 CHRNA4P43681 627 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 NPY2RP49146 381 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 SLC7A9P82251 487 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 UBE3AQ05086 875 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 LBRQ14739 615 aaKnown RBP14□□□□□ -0.17
PTPRF-202ENST00000372405 PPM1LQ5SGD2 360 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 KDELC2Q7Z4H8 507 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 FAM217AQ8IXS0 508 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 DENND1AQ8TEH3 1009 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 TCEAL4Q96EI5 215 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 ZNF778Q96MU6 729 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 KLF6Q99612 283 aaPredicted RBP14□□□□□ -0.17
PTPRF-202ENST00000372405 LBHD1Q9BQE6 289 aaPredicted RBP14□□□□□ -0.17
PTPRF-202ENST00000372405 SLC46A2Q9BY10 475 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 IL22Q9GZX6 179 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 MTIF3Q9H2K0 278 aaKnown RBP14□□□□□ -0.17
PTPRF-202ENST00000372405 MAN1C1Q9NR34 630 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 SENP1Q9P0U3 644 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 SAMD15Q9P1V8 674 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 RWDD3Q9Y3V2 267 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 FAM237BA0A1B0GVD1 139 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 ILVBLA1L0T0 632 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 ERICH4A6NGS2 130 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 PRPF4O43172 522 aaKnown RBP eCLIP14□□□□□ -0.177e-7■■■□□ 16.8
PTPRF-202ENST00000372405 MOSPD3O75425 235 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 NEBLO76041 1014 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 CKMP06732 381 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 POLBP06746 335 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 CA3P07451 260 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 ERVK-10P10266 1014 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 EPCAMP16422 314 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 CD86P42081 329 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 WNT3AP56704 352 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 WDR4P57081 412 aaKnown RBP14□□□□□ -0.17
PTPRF-202ENST00000372405 DMTNQ08495 405 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 ANKRD20A4Q4UJ75 823 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 FSCBQ5H9T9 825 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 SPANXN3Q5MJ09 141 aa14□□□□□ -0.17
PTPRF-202ENST00000372405 TMCO4Q5TGY1 634 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms