RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 PRCCQ92733 491 aaPredicted RBP20.26■□□□□ 0.83
CLN3-205ENST00000359984 SLC2A11Q9BYW1 496 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 ECT2Q9H8V3 914 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 GLOD4Q9HC38 313 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 UBA2Q9UBT2 640 aaPredicted RBP20.26■□□□□ 0.83
CLN3-205ENST00000359984 VPS51Q9UID3 782 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 ATP8A1Q9Y2Q0 1164 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 CACNG3O60359 315 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 ERLIN1O75477 346 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 CD160O95971 181 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 MAGEA6P43360 314 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 MMP13P45452 471 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 ZNF557Q8N988 423 aaPredicted RBP20.26■□□□□ 0.83
CLN3-205ENST00000359984 HNRNPLLQ8WVV9 542 aaKnown RBP20.26■□□□□ 0.83
CLN3-205ENST00000359984 FMO2Q99518 471 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 GORASP1Q9BQQ3 440 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 NT5MQ9NPB1 228 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 FBXO10Q9UK96 956 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 SHOC2Q9UQ13 582 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 NUMBLQ9Y6R0 609 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 SPTBN5Q9NRC6 3674 aaKnown RBP20.25■□□□□ 0.83
CLN3-205ENST00000359984 ANHXE9PGG2 379 aa20.25■□□□□ 0.83
CLN3-205ENST00000359984 NDC80O14777 642 aa20.25■□□□□ 0.83
CLN3-205ENST00000359984 TRIM24O15164 1050 aa20.25■□□□□ 0.83
CLN3-205ENST00000359984 CHADO15335 359 aa20.25■□□□□ 0.83
CLN3-205ENST00000359984 NEBLO76041 1014 aa20.25■□□□□ 0.83
CLN3-205ENST00000359984 TMEM63AO94886 807 aa20.25■□□□□ 0.83
CLN3-205ENST00000359984 HTR4Q13639 388 aa20.25■□□□□ 0.83
CLN3-205ENST00000359984 GAB4Q2WGN9 574 aa20.25■□□□□ 0.83
CLN3-205ENST00000359984 PITRM1Q5JRX3 1037 aa20.25■□□□□ 0.83
CLN3-205ENST00000359984 LINGO4Q6UY18 593 aa20.25■□□□□ 0.83
CLN3-205ENST00000359984 HOOK3Q86VS8 718 aa20.25■□□□□ 0.83
CLN3-205ENST00000359984 PGBD5Q8N414 524 aa20.25■□□□□ 0.83
CLN3-205ENST00000359984 HLA-CQ95604 372 aa20.25■□□□□ 0.83
CLN3-205ENST00000359984 PWWP2AQ96N64 755 aa20.25■□□□□ 0.83
CLN3-205ENST00000359984 C2orf49Q9BVC5 232 aaPredicted RBP20.25■□□□□ 0.83
CLN3-205ENST00000359984 GGA2Q9UJY4 613 aa20.25■□□□□ 0.83
CLN3-205ENST00000359984 TTLL3Q9Y4R7 772 aa20.25■□□□□ 0.83
CLN3-205ENST00000359984 KIF26AQ9ULI4 1882 aaPredicted RBP20.25■□□□□ 0.83
CLN3-205ENST00000359984 APRTP07741 180 aa20.24■□□□□ 0.83
CLN3-205ENST00000359984 PABPC1P11940 636 aaKnown RBP20.24■□□□□ 0.83
CLN3-205ENST00000359984 GDI1P31150 447 aa20.24■□□□□ 0.83
CLN3-205ENST00000359984 MAP9Q49MG5 647 aa20.24■□□□□ 0.83
CLN3-205ENST00000359984 C12orf40Q86WS4 652 aa20.24■□□□□ 0.83
CLN3-205ENST00000359984 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.24■□□□□ 0.83
CLN3-205ENST00000359984 EXOC4Q96A65 974 aa20.24■□□□□ 0.83
CLN3-205ENST00000359984 MTRF1LQ9UGC7 380 aaKnown RBP20.24■□□□□ 0.83
CLN3-205ENST00000359984 CISD3P0C7P0 127 aa20.24■□□□□ 0.83
CLN3-205ENST00000359984 RUNX3Q13761 415 aa20.24■□□□□ 0.83
CLN3-205ENST00000359984 RFTN1Q14699 578 aaPredicted RBP20.24■□□□□ 0.83
CLN3-205ENST00000359984 CYTH1Q15438 398 aa20.24■□□□□ 0.83
CLN3-205ENST00000359984 FUT11Q495W5 492 aa20.24■□□□□ 0.83
CLN3-205ENST00000359984 BEND6Q5SZJ8 279 aaPredicted RBP20.24■□□□□ 0.83
CLN3-205ENST00000359984 EMBQ6PCB8 327 aa20.24■□□□□ 0.83
CLN3-205ENST00000359984 KIAA0907Q7Z7F0 614 aaPredicted RBP20.24■□□□□ 0.83
CLN3-205ENST00000359984 ETFBKMTQ8IXQ9 262 aa20.24■□□□□ 0.83
CLN3-205ENST00000359984 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.24■□□□□ 0.83
CLN3-205ENST00000359984 ACDQ96AP0 544 aa20.24■□□□□ 0.83
CLN3-205ENST00000359984 GDAP1L1Q96MZ0 367 aa20.24■□□□□ 0.83
CLN3-205ENST00000359984 XPO6Q96QU8 1125 aaKnown RBP20.24■□□□□ 0.83
CLN3-205ENST00000359984 FCRL5Q96RD9 977 aa20.24■□□□□ 0.83
CLN3-205ENST00000359984 TRMT61BQ9BVS5 477 aaKnown RBP20.24■□□□□ 0.83
CLN3-205ENST00000359984 DNAJC17Q9NVM6 304 aaKnown RBP20.24■□□□□ 0.83
CLN3-205ENST00000359984 MYO18AQ92614 2054 aaKnown RBP20.23■□□□□ 0.83
CLN3-205ENST00000359984 C2CD4DB7Z1M9 353 aa20.23■□□□□ 0.83
CLN3-205ENST00000359984 E7EVH7 732 aa20.23■□□□□ 0.83
CLN3-205ENST00000359984 GOLGA8MH3BSY2 632 aa20.23■□□□□ 0.83
CLN3-205ENST00000359984 SMAPO00193 183 aa20.23■□□□□ 0.83
CLN3-205ENST00000359984 MUSKO15146 869 aa20.23■□□□□ 0.83
CLN3-205ENST00000359984 MT-CO1P00395 513 aa20.23■□□□□ 0.83
CLN3-205ENST00000359984 MAXP61244 160 aa20.23■□□□□ 0.83
CLN3-205ENST00000359984 ZNF235Q14590 738 aa20.23■□□□□ 0.83
CLN3-205ENST00000359984 CPA6Q8N4T0 437 aa20.23■□□□□ 0.83
CLN3-205ENST00000359984 ZCCHC9Q8N567 271 aaKnown RBP20.23■□□□□ 0.83
CLN3-205ENST00000359984 PDCD7Q8N8D1 485 aaKnown RBP20.23■□□□□ 0.83
CLN3-205ENST00000359984 PKNOX2Q96KN3 472 aa20.23■□□□□ 0.83
CLN3-205ENST00000359984 MLPHQ9BV36 600 aaPredicted RBP20.23■□□□□ 0.83
CLN3-205ENST00000359984 OGFRQ9NZT2 677 aa20.23■□□□□ 0.83
CLN3-205ENST00000359984 SEPT3Q9UH03 358 aa20.23■□□□□ 0.83
CLN3-205ENST00000359984 TPSB2P20231 275 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 ITKQ08881 620 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 TPSAB1Q15661 275 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 TSEN2Q8NCE0 465 aaKnown RBP20.22■□□□□ 0.83
CLN3-205ENST00000359984 SPATA22Q8NHS9 363 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 TTC8Q8TAM2 541 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 CAVIN3Q969G5 261 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 OXNAD1Q96HP4 312 aaPredicted RBP20.22■□□□□ 0.83
CLN3-205ENST00000359984 CINPQ9BW66 212 aaPredicted RBP20.22■□□□□ 0.83
CLN3-205ENST00000359984 GTSE1Q9NYZ3 720 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 TULP3O75386 442 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 SLC6A11P48066 632 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 LMAN1P49257 510 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 DGKGP49619 791 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 NIPAL4Q0D2K0 466 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 NR1H3Q13133 447 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 DMC1Q14565 340 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 INO80DQ53TQ3 878 aaPredicted RBP20.22■□□□□ 0.83
CLN3-205ENST00000359984 RETSATQ6NUM9 610 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 ADIPOR2Q86V24 386 aa20.22■□□□□ 0.83
CLN3-205ENST00000359984 KLHDC8BQ8IXV7 354 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms