RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 LRRC8BQ6P9F7 803 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 RAB44Q7Z6P3 723 aaPredicted RBP9.43□□□□□ -0.9
ATG4A-202ENST00000345734 RNF168Q8IYW5 571 aaPredicted RBP9.43□□□□□ -0.9
ATG4A-202ENST00000345734 USP33Q8TEY7 942 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 MZB1Q8WU39 189 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 DPF3Q92784 378 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 TOP1MTQ969P6 601 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 EBNA1BP2Q99848 306 aaKnown RBP9.43□□□□□ -0.9
ATG4A-202ENST00000345734 SLC39A8Q9C0K1 460 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 SUDS3Q9H7L9 328 aaPredicted RBP9.43□□□□□ -0.9
ATG4A-202ENST00000345734 CCSER2Q9H7U1 834 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 PPCSQ9HAB8 311 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 TLR8Q9NR97 1041 aaKnown RBP9.43□□□□□ -0.9
ATG4A-202ENST00000345734 SMYD2Q9NRG4 433 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 MTRRQ9UBK8 725 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 VANGL2Q9ULK5 521 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 MAGED2Q9UNF1 606 aaPredicted RBP9.43□□□□□ -0.9
ATG4A-202ENST00000345734 ACTL7BQ9Y614 415 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 GPC6Q9Y625 555 aaPredicted RBP9.43□□□□□ -0.9
ATG4A-202ENST00000345734 PTPRSQ13332 1948 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 LAMA3Q16787 3333 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 TRIM43BA6NCK2 446 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 ST8SIA5O15466 376 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 USP12O75317 370 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 SPAG6O75602 509 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 APOEP02649 317 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 THBS1P07996 1170 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 CSF2RAP15509 400 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 EPB42P16452 691 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 MGAT1P26572 445 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 MLLT6P55198 1093 aaPredicted RBP9.42□□□□□ -0.9
ATG4A-202ENST00000345734 SMARCB1Q12824 385 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 RASA2Q15283 850 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 TEX44Q53QW1 395 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 SLC8B1Q6J4K2 584 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 TRMT10BQ6PF06 316 aaKnown RBP9.42□□□□□ -0.9
ATG4A-202ENST00000345734 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.42□□□□□ -0.9
ATG4A-202ENST00000345734 GDAP1Q8TB36 358 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 ZSCAN18Q8TBC5 510 aaPredicted RBP9.42□□□□□ -0.9
ATG4A-202ENST00000345734 C2orf15Q8WU43 125 aaKnown RBP9.42□□□□□ -0.9
ATG4A-202ENST00000345734 SLC44A1Q8WWI5 657 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 TRIM43Q96BQ3 446 aaPredicted RBP9.42□□□□□ -0.9
ATG4A-202ENST00000345734 LRRC39Q96DD0 335 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 ZNF419Q96HQ0 510 aaPredicted RBP9.42□□□□□ -0.9
ATG4A-202ENST00000345734 ZNF317Q96PQ6 595 aaPredicted RBP9.42□□□□□ -0.9
ATG4A-202ENST00000345734 CLSTN3Q9BQT9 956 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 MLPHQ9BV36 600 aaPredicted RBP9.42□□□□□ -0.9
ATG4A-202ENST00000345734 BRD8Q9H0E9 1235 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 C12orf49Q9H741 205 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 CATSPERBQ9H7T0 1116 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 CAPN10Q9HC96 672 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 PRDM5Q9NQX1 630 aaPredicted RBP9.42□□□□□ -0.9
ATG4A-202ENST00000345734 EIF2B3Q9NR50 452 aaKnown RBP9.42□□□□□ -0.9
ATG4A-202ENST00000345734 CLIC5Q9NZA1 410 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 MARCH2Q9P0N8 246 aa9.42□□□□□ -0.9
ATG4A-202ENST00000345734 SLC12A8A0AV02 714 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 FGF10O15520 208 aaPredicted RBP9.41□□□□□ -0.9
ATG4A-202ENST00000345734 MAN1A2O60476 641 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 UGT1A9O60656 530 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 SEC24AO95486 1093 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 F11P03951 625 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 ACRP10323 421 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 NFKB1P19838 968 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 DRD4P21917 467 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 STX2P32856 288 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 CDK16Q00536 496 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 SFSWAPQ12872 951 aaKnown RBP9.41□□□□□ -0.9
ATG4A-202ENST00000345734 MS4A13Q5J8X5 152 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 KIAA1841Q6NSI8 718 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 CASC4Q6P4E1 433 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 OTOP3Q7RTS5 596 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 TAX1BP1Q86VP1 789 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 CTAGE3PQ8IX95 158 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 ZNF683Q8IZ20 524 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 UNC5BQ8IZJ1 945 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 ATPAF2Q8N5M1 289 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 PPM1NQ8N819 430 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 OR52K1Q8NGK4 314 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 DYDC1Q8WWB3 177 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 MIEF2Q96C03 454 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 ZNF689Q96CS4 500 aaPredicted RBP9.41□□□□□ -0.9
ATG4A-202ENST00000345734 C1orf74Q96LT6 269 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 KLF6Q99612 283 aaPredicted RBP9.41□□□□□ -0.9
ATG4A-202ENST00000345734 SH3GL3Q99963 347 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 OXCT2Q9BYC2 517 aaPredicted RBP9.41□□□□□ -0.9
ATG4A-202ENST00000345734 GBA3Q9H227 469 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 C11orf49Q9H6J7 331 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 UGT1A7Q9HAW7 530 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 UGT1A10Q9HAW8 530 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 UGT1A8Q9HAW9 530 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 SYBUQ9NX95 663 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 PCDHA11Q9Y5I1 949 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 BACE2Q9Y5Z0 518 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 RPS6KL1Q9Y6S9 549 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 KIAA1671Q9BY89 1806 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 FAM47DPA6NHR8 397 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 SDR42E2A6NKP2 422 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 GOLGA8RI6L899 631 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 MAFKO60675 156 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 CNTN5O94779 1100 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms