RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 CDK17Q00537 523 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 MED22Q15528 200 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 ELMOD1Q8N336 334 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 FAM71DQ8N9W8 422 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 HM13Q8TCT9 377 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 ANKZF1Q9H8Y5 726 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 SETD4Q9NVD3 440 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 ZNF69Q9UC07 566 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 RFX7Q2KHR2 1363 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 ZNF705EA8MWA4 302 aaPredicted RBP6.24□□□□□ -1.41
VCAN-203ENST00000343200 FAM47E-STBD1D6RA91 191 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 DNM1LO00429 736 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 INPPL1O15357 1258 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 DYRK3O43781 588 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 RBMXL2O75526 392 aaKnown RBP6.24□□□□□ -1.41
VCAN-203ENST00000343200 ALADP13716 330 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 PDGFRAP16234 1089 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 PRKACBP22694 351 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 SMIM11AP58511 58 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 CCNA1P78396 465 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 TWF1Q12792 350 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 FGD3Q5JSP0 725 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 THEM5Q8N1Q8 247 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 PLBD2Q8NHP8 589 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 METTL6Q8TCB7 284 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 FCGR1BQ92637 280 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 RBM17Q96I25 401 aaKnown RBP6.24□□□□□ -1.41
VCAN-203ENST00000343200 ARL5BQ96KC2 179 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 MGME1Q9BQP7 344 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 NEK6Q9HC98 313 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 ZNF334Q9HCZ1 680 aaPredicted RBP6.24□□□□□ -1.41
VCAN-203ENST00000343200 UCKL1Q9NWZ5 548 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 STAP2Q9UGK3 403 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 MRPS7Q9Y2R9 242 aaKnown RBP6.24□□□□□ -1.41
VCAN-203ENST00000343200 POLR1DQ9Y2S0 133 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 POLR3HQ9Y535 204 aaPredicted RBP6.24□□□□□ -1.41
VCAN-203ENST00000343200 PCDHB6Q9Y5E3 794 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 MLH3Q9UHC1 1453 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 PLCE1Q9P212 2302 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 BCKDKO14874 412 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 CASKO14936 926 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 MUSKO15146 869 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 RGL2O15211 777 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 CYP11B2P19099 503 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 HTR2AP28223 471 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 COILP38432 576 aaPredicted RBP6.24□□□□□ -1.41
VCAN-203ENST00000343200 AP3M2P53677 418 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 FGL2Q14314 439 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 TTLL9Q3SXZ7 439 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 STYK1Q6J9G0 422 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 ACAD10Q6JQN1 1059 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 PAGE2Q7Z2X7 111 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 P2RY8Q86VZ1 359 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 NIM1KQ8IY84 436 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 SPATA6LQ8N4H0 392 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 AGPAT1Q99943 283 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 TMEM216Q9P0N5 145 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 ZNF639Q9UID6 485 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 GDAQ9Y2T3 454 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 LEMD3Q9Y2U8 911 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 ATAD5Q96QE3 1844 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 ARFGEF2Q9Y6D5 1785 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 E2F8A0AVK6 867 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 B8ZZF3 427 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 DDX3XO00571 662 aaKnown RBP eCLIP6.24□□□□□ -1.41
VCAN-203ENST00000343200 SCAMP1O15126 338 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 CASC3O15234 703 aaKnown RBP6.24□□□□□ -1.41
VCAN-203ENST00000343200 MSH4O15457 936 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 OR5F1O95221 314 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 TPBGLP0DKB5 382 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 LSM3P62310 102 aaKnown RBP6.24□□□□□ -1.41
VCAN-203ENST00000343200 ABRQ12979 859 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 KIAA1841Q6NSI8 718 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 ZNF75CPQ92670 426 aaPredicted RBP6.24□□□□□ -1.41
VCAN-203ENST00000343200 GMCL1Q96IK5 515 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 CDRT15Q96T59 188 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 SPOCK3Q9BQ16 436 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 LEF1Q9UJU2 399 aaPredicted RBP6.24□□□□□ -1.41
VCAN-203ENST00000343200 JAG2Q9Y219 1238 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 THRAP3Q9Y2W1 955 aaKnown RBP6.24□□□□□ -1.41
VCAN-203ENST00000343200 ZMYM2Q9UBW7 1377 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 M0R233 179 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 SH2B2O14492 632 aaPredicted RBP6.24□□□□□ -1.41
VCAN-203ENST00000343200 VPS26AO75436 327 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 ATXN8OSP0DMR3 200 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 BGNP21810 368 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 GTF2E2P29084 291 aaKnown RBP6.24□□□□□ -1.41
VCAN-203ENST00000343200 LIFRP42702 1097 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 GCLMP48507 274 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 EIF4A1P60842 406 aaKnown RBP6.24□□□□□ -1.41
VCAN-203ENST00000343200 WDR45BQ5MNZ6 344 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 PTRHD1Q6GMV3 140 aaKnown RBP6.24□□□□□ -1.41
VCAN-203ENST00000343200 GLYCTKQ8IVS8 523 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 GALNT12Q8IXK2 581 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 FNDC5Q8NAU1 212 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 C15orf40Q8WUR7 153 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 MED15Q96RN5 788 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 CDC42EP4Q9H3Q1 356 aaKnown RBP6.24□□□□□ -1.41
VCAN-203ENST00000343200 RAB21Q9UL25 225 aa6.24□□□□□ -1.41
VCAN-203ENST00000343200 ERVK-11Q9UQG0 969 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms