RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 MKL2Q9ULH7 1088 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 POLHQ9Y253 713 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 GTPBP1O00178 669 aaKnown RBP8.54□□□□□ -1.04
HMGB1-203ENST00000341423 MBTPS2O43462 519 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 RLBP1P12271 317 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 MLNP12872 115 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 TYRP14679 529 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 NFATC2Q13469 925 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 RASIP1Q5U651 963 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 CRTC1Q6UUV9 634 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 CYP20A1Q6UW02 462 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 PTPRN2Q92932 1015 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 FAM234BA2RU67 622 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 ITGB1P05556 798 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 ZNF865P0CJ78 1059 aaPredicted RBP8.54□□□□□ -1.04
HMGB1-203ENST00000341423 HLA-DPA1P20036 260 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 SYT1P21579 422 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 RABIFP47224 123 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 NUP107P57740 925 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 GALNT7Q86SF2 657 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 GPR149Q86SP6 731 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 ADGRG2Q8IZP9 1017 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 FAM174AQ8TBP5 190 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 LRRC37BQ96QE4 947 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 RNF32Q9H0A6 362 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 RBM22Q9NW64 420 aaKnown RBP eCLIP8.54□□□□□ -1.04
HMGB1-203ENST00000341423 GMIPQ9P107 970 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.54□□□□□ -1.04
HMGB1-203ENST00000341423 CDC42BPAQ5VT25 1732 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 A0A1B0GVM2 712 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 TCAF2A6NFQ2 919 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 ATP4AP20648 1035 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 EEF1GP26641 437 aaKnown RBP8.53□□□□□ -1.04
HMGB1-203ENST00000341423 CLCNKBP51801 687 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 ZXDAP98168 799 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 IL9RQ01113 521 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 RBM44Q6ZP01 1051 aaKnown RBP8.53□□□□□ -1.04
HMGB1-203ENST00000341423 NLRP9Q7RTR0 991 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 GPR155Q7Z3F1 870 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 TMEM200AQ86VY9 491 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 FAM228AQ86W67 206 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 FAM111AQ96PZ2 611 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 FOXQ1Q9C009 403 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 CDT1Q9H211 546 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 C3orf14Q9HBI5 128 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 STX18Q9P2W9 335 aaKnown RBP8.53□□□□□ -1.04
HMGB1-203ENST00000341423 RAD54BQ9Y620 910 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 SLC25A12O75746 678 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 SYNGR4O95473 234 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 CYP2F1P24903 491 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 GATMP50440 423 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 RPS21P63220 83 aaKnown RBP8.53□□□□□ -1.04
HMGB1-203ENST00000341423 FBXO38Q6PIJ6 1188 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 SELENOSQ9BQE4 189 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 SGIP1Q9BQI5 828 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 ZNF717Q9BY31 904 aaPredicted RBP8.53□□□□□ -1.04
HMGB1-203ENST00000341423 PACSIN2Q9UNF0 486 aaPredicted RBP8.53□□□□□ -1.04
HMGB1-203ENST00000341423 BTBD17A6NE02 478 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 H3BMM5 538 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 IRAK2O43187 625 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 HEXBP07686 556 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 GLULP15104 373 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 RARRES1P49788 294 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 SLC9A5Q14940 896 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 FAM131BQ86XD5 332 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 CMTM8Q8IZV2 173 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 OR2T3Q8NH03 318 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 WDR92Q96MX6 357 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 RILPQ96NA2 401 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 SEMA4GQ9NTN9 838 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 LAMP2P13473 410 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 PREPP48147 710 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 CDH15P55291 814 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 MYL6P60660 151 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 ZNF658Q5TYW1 1059 aaPredicted RBP8.53□□□□□ -1.04
HMGB1-203ENST00000341423 CACHD1Q5VU97 1274 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 BTNL9Q6UXG8 535 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 TRIM42Q8IWZ5 723 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 LTB4R2Q9NPC1 389 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 TMPRSS4Q9NRS4 437 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 HYKKA2RU49 373 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 KLRC4-KLRK1H3BQV0 150 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 SCAMP1O15126 338 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 FGF10O15520 208 aaPredicted RBP8.53□□□□□ -1.04
HMGB1-203ENST00000341423 TRUB2O95900 331 aaKnown RBP8.53□□□□□ -1.04
HMGB1-203ENST00000341423 CRYBA1P05813 215 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 DLDP09622 509 aaKnown RBP8.53□□□□□ -1.04
HMGB1-203ENST00000341423 FXR1P51114 621 aaKnown RBP eCLIP8.53□□□□□ -1.04
HMGB1-203ENST00000341423 PLOD1Q02809 727 aaPredicted RBP8.53□□□□□ -1.04
HMGB1-203ENST00000341423 KLHL40Q2TBA0 621 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 ZC3H12BQ5HYM0 836 aaKnown RBP8.53□□□□□ -1.04
HMGB1-203ENST00000341423 CFAP52Q8N1V2 620 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 ATL1Q8WXF7 558 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 CBWD1Q9BRT8 395 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 MIEF1Q9NQG6 463 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 PAK6Q9NQU5 681 aaPredicted RBP8.53□□□□□ -1.04
HMGB1-203ENST00000341423 HS3ST4Q9Y661 456 aa8.53□□□□□ -1.04
HMGB1-203ENST00000341423 CLASP2O75122 1294 aaKnown RBP8.52□□□□□ -1.04
HMGB1-203ENST00000341423 NOL4O94818 638 aa8.52□□□□□ -1.04
HMGB1-203ENST00000341423 ALDOAP04075 364 aaKnown RBP8.52□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms