RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 TPCN2Q8NHX9 752 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 KCNE4Q8WWG9 221 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 CCDC97Q96F63 343 aaPredicted RBP15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 CPXM1Q96SM3 734 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 MYOCQ99972 504 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 DNAJC28Q9NX36 388 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 VPS51Q9UID3 782 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 PCDHGC3Q9UN70 934 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 CSNK1G3Q9Y6M4 447 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 NAV2Q8IVL1 2488 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 DAB1O75553 588 aa15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 CD44P16070 742 aaKnown RBP15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 RPS21P63220 83 aaKnown RBP15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 TMEM259Q4ZIN3 620 aa15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 OR6B2Q6IFH4 312 aa15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 ZCCHC8Q6NZY4 707 aaKnown RBP15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 KYAT3Q6YP21 454 aaKnown RBP15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 GCNT7Q6ZNI0 430 aa15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 Q6ZSR6 202 aa15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 SLC26A9Q7LBE3 791 aa15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 PTAR1Q7Z6K3 402 aaPredicted RBP15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 ZDHHC17Q8IUH5 632 aa15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 C1orf131Q8NDD1 294 aaKnown RBP15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 MAPK15Q8TD08 544 aa15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 SNRNP27Q8WVK2 155 aaKnown RBP15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 KLK6Q92876 244 aa15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 ARRDC3Q96B67 414 aa15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 FEM1CQ96JP0 617 aa15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 SIK2Q9H0K1 926 aa15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 FZD3Q9NPG1 666 aa15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 IL36AQ9UHA7 158 aa15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 MAN1B1Q9UKM7 699 aa15.11■□□□□ 0.01
CCDC88B-201ENST00000301897 K7ESM1 405 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 M0QYT0 321 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 GRAP2O75791 330 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 MT-CO1P00395 513 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 F9P00740 461 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 GIMD1P0DJR0 217 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 RRM1P23921 792 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 RBMS1P29558 406 aaKnown RBP15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 USP8P40818 1118 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 RABIFP47224 123 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 NEK3P51956 506 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 SLC6A3Q01959 620 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 SLC20A2Q08357 652 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 PAK1Q13153 545 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 ISM2Q6H9L7 571 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 C22orf39Q6P5X5 142 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 PCSK4Q6UW60 755 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 OLFML1Q6UWY5 402 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 ZNF783Q6ZMS7 281 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 ZNF397Q8NF99 534 aaPredicted RBP15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 IFI44Q8TCB0 444 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 NAF1Q96HR8 494 aaKnown RBP15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 PSMB7Q99436 277 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 SLC17A9Q9BYT1 436 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 CEP44Q9C0F1 390 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 WDCPQ9H6R7 721 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 SYNCQ9H7C4 482 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 GPR27Q9NS67 375 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 STAP1Q9ULZ2 295 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 ZFR2Q9UPR6 939 aaKnown RBP15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 CTNND2Q9UQB3 1225 aa15.1■□□□□ 0.01
CCDC88B-201ENST00000301897 SPTY2D1-AS1A0A0U1RR47 76 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 PPP1R3GB7ZBB8 358 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 AP1G1O43747 822 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 SNAP91O60641 907 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 CSF2P04141 144 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 NME1P15531 152 aaKnown RBP15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 ITGB7P26010 798 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 KRT9P35527 623 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 MLLT3P42568 568 aaPredicted RBP15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 CXCR3P49682 368 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 IRAK1P51617 712 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 CLDN2P57739 230 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 PTK2Q05397 1052 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 VAC14Q08AM6 782 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 ARSIQ5FYB1 569 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 ARHGAP40Q5TG30 622 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 RETSATQ6NUM9 610 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 TRIM65Q6PJ69 517 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 FAM183BPQ6ZVS7 135 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 C14orf80Q86SX3 495 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 PARGQ86W56 976 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 SLC22A18ASQ8N1D0 253 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 WDTC1Q8N5D0 677 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 PCDH20Q8N6Y1 951 aaKnown RBP15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 ZNF548Q8NEK5 533 aaPredicted RBP15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 WDR48Q8TAF3 677 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 GRIN3AQ8TCU5 1115 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 GLMNQ92990 594 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 PGAP3Q96FM1 320 aaPredicted RBP15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 C1orf74Q96LT6 269 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 TKTL2Q9H0I9 626 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 ASCL3Q9NQ33 180 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 ARHGEF38Q9NXL2 777 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 APEX2Q9UBZ4 518 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 IPO11Q9UI26 975 aaKnown RBP15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 SALL4Q9UJQ4 1053 aa15.09■□□□□ 0.01
CCDC88B-201ENST00000301897 DOCK4Q8N1I0 1966 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms