RNA–Protein interactions for RNA: ENST00000273342.8

COL8A1-202, Transcript of collagen type VIII alpha 1 chain, humanhuman

APPRIS P1 TSL 2 BASIC

Gene COL8A1, Length 3,029 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-202ENST00000273342 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.11□□□□□ -0.31
COL8A1-202ENST00000273342 GMEB1Q9Y692 573 aa13.11□□□□□ -0.31
COL8A1-202ENST00000273342 COL11A2P13942 1736 aaPredicted RBP13.11□□□□□ -0.31
COL8A1-202ENST00000273342 PRORSD1PA6NEY8 169 aa13.11□□□□□ -0.31
COL8A1-202ENST00000273342 SOCS2O14508 198 aa13.11□□□□□ -0.31
COL8A1-202ENST00000273342 PGK2P07205 417 aa13.11□□□□□ -0.31
COL8A1-202ENST00000273342 YAP1P46937 504 aaKnown RBP13.11□□□□□ -0.31
COL8A1-202ENST00000273342 ATP1A4Q13733 1029 aa13.11□□□□□ -0.31
COL8A1-202ENST00000273342 OGFOD2Q6N063 350 aa13.11□□□□□ -0.31
COL8A1-202ENST00000273342 ERI1Q8IV48 349 aaKnown RBP13.11□□□□□ -0.31
COL8A1-202ENST00000273342 MICALL2Q8IY33 904 aa13.11□□□□□ -0.31
COL8A1-202ENST00000273342 OFCC1Q8IZS5 231 aa13.11□□□□□ -0.31
COL8A1-202ENST00000273342 SLC45A3Q96JT2 553 aa13.11□□□□□ -0.31
COL8A1-202ENST00000273342 PFDN4Q9NQP4 134 aa13.11□□□□□ -0.31
COL8A1-202ENST00000273342 BFARQ9NZS9 450 aa13.11□□□□□ -0.31
COL8A1-202ENST00000273342 CIDEBQ9UHD4 219 aa13.11□□□□□ -0.31
COL8A1-202ENST00000273342 EGFL7Q9UHF1 273 aa13.11□□□□□ -0.31
COL8A1-202ENST00000273342 BCAP29Q9UHQ4 241 aa13.11□□□□□ -0.31
COL8A1-202ENST00000273342 LTBP4Q8N2S1 1624 aa13.11□□□□□ -0.31
COL8A1-202ENST00000273342 GIPC1O14908 333 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 SBK3P0C264 359 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 FAM163BP0C2L3 166 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 GRIA3P42263 894 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 SULT1E1P49888 294 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 GPR107Q5VW38 600 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 NT5DC4Q86YG4 428 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 DENND6AQ8IWF6 608 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 LSMEM2Q8N112 164 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 C12orf43Q96C57 262 aaKnown RBP13.1□□□□□ -0.31
COL8A1-202ENST00000273342 NXNL1Q96CM4 212 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 SLC2A11Q9BYW1 496 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 NAA50Q9GZZ1 169 aaKnown RBP13.1□□□□□ -0.31
COL8A1-202ENST00000273342 C9IYK1 514 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 DLX3O60479 287 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 MT-ND1P03886 318 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 PTPRAP18433 802 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 VARSP26640 1264 aaKnown RBP13.1□□□□□ -0.31
COL8A1-202ENST00000273342 CDK9P50750 372 aaKnown RBP13.1□□□□□ -0.31
COL8A1-202ENST00000273342 RPL26P61254 145 aaKnown RBP13.1□□□□□ -0.31
COL8A1-202ENST00000273342 PRPSAP1Q14558 356 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 GJC2Q5T442 439 aaPredicted RBP13.1□□□□□ -0.31
COL8A1-202ENST00000273342 LIPMQ5VYY2 423 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 CTU1Q7Z7A3 348 aaKnown RBP13.1□□□□□ -0.31
COL8A1-202ENST00000273342 PATL1Q86TB9 770 aaKnown RBP13.1□□□□□ -0.31
COL8A1-202ENST00000273342 DEFB106AQ8N104 65 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 CANT1Q8WVQ1 401 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 THAP11Q96EK4 314 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 FTHL17Q9BXU8 183 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 DRC3Q9H069 523 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 LRRC40Q9H9A6 602 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 PLK2Q9NYY3 685 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 BLOC1S6Q9UL45 172 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 PCDHGA7Q9Y5G6 932 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 V9GYQ6 96 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 ZCWPW2A0A1B0GU75 182 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 A0A1W2PPW3 197 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 ZBTB42B2RXF5 422 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 FAM72CH0Y354 149 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 H3BNH8 94 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 J3QRK9 145 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 TRIM38O00635 465 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 ZBTB24O43167 697 aaPredicted RBP13.1□□□□□ -0.31
COL8A1-202ENST00000273342 GNL1P36915 607 aaPredicted RBP13.1□□□□□ -0.31
COL8A1-202ENST00000273342 NR2C2P49116 596 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 MBTD1Q05BQ5 628 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 TRIM25Q14258 630 aaKnown RBP13.1□□□□□ -0.31
COL8A1-202ENST00000273342 FAM72AQ5TYM5 149 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 FAM72DQ6L9T8 149 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 HMBOX1Q6NT76 420 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 TTC33Q6PID6 262 aaPredicted RBP13.1□□□□□ -0.31
COL8A1-202ENST00000273342 GPR141Q7Z602 305 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 FAM72BQ86X60 149 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 FIBCD1Q8N539 461 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 CXorf38Q8TB03 319 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 SLC35F5Q8WV83 523 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 CYGBQ8WWM9 190 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 SLCO4A1Q96BD0 722 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 FBXL8Q96CD0 374 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 AKT3Q9Y243 479 aa13.1□□□□□ -0.31
COL8A1-202ENST00000273342 PSMD12O00232 456 aaPredicted RBP13.09□□□□□ -0.31
COL8A1-202ENST00000273342 HTRA2O43464 458 aaPredicted RBP13.09□□□□□ -0.31
COL8A1-202ENST00000273342 ZFXP17010 805 aaPredicted RBP13.09□□□□□ -0.31
COL8A1-202ENST00000273342 PROZP22891 400 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 LMO2P25791 158 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 HSPA13P48723 471 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 MPP1Q00013 466 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 ZNF618Q5T7W0 954 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 ELMSAN1Q6PJG2 1045 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 PHF21BQ96EK2 531 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 LRCH3Q96II8 777 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 FZD8Q9H461 694 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 FBRSL1Q9HCM7 1045 aaKnown RBP13.09□□□□□ -0.31
COL8A1-202ENST00000273342 TNFRSF12AQ9NP84 129 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 CHST12Q9NRB3 414 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 SNX10Q9Y5X0 201 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 COL2A1P02458 1487 aaPredicted RBP13.09□□□□□ -0.31
COL8A1-202ENST00000273342 ANKRD12Q6UB98 2062 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 TMEM114B3SHH9 223 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 BTBD19C9JJ37 291 aa13.09□□□□□ -0.31
COL8A1-202ENST00000273342 ATE1O95260 518 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms