RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 FGFR3P22607 806 aa21.65■■□□□ 1.06
TRIM28-201ENST00000253024 PAFAH1B3Q15102 231 aaKnown RBP21.65■■□□□ 1.06
TRIM28-201ENST00000253024 ILKAPQ9H0C8 392 aaPredicted RBP21.65■■□□□ 1.06
TRIM28-201ENST00000253024 GDAP2Q9NXN4 497 aa21.65■■□□□ 1.06
TRIM28-201ENST00000253024 MYADML2A6NDP7 307 aa21.65■■□□□ 1.06
TRIM28-201ENST00000253024 ATP6V1B1P15313 513 aa21.65■■□□□ 1.06
TRIM28-201ENST00000253024 TFEBP19484 476 aa21.65■■□□□ 1.06
TRIM28-201ENST00000253024 EPGNQ6UW88 154 aa21.65■■□□□ 1.06
TRIM28-201ENST00000253024 TMEM135Q86UB9 458 aa21.65■■□□□ 1.06
TRIM28-201ENST00000253024 RYBPQ8N488 228 aaPredicted RBP21.65■■□□□ 1.06
TRIM28-201ENST00000253024 TSNARE1Q96NA8 513 aa21.65■■□□□ 1.06
TRIM28-201ENST00000253024 SEMA6AQ9H2E6 1030 aa21.65■■□□□ 1.06
TRIM28-201ENST00000253024 FBXW11Q9UKB1 542 aa21.65■■□□□ 1.06
TRIM28-201ENST00000253024 APPL1Q9UKG1 709 aa21.65■■□□□ 1.06
TRIM28-201ENST00000253024 CDY2AQ9Y6F7 541 aa21.65■■□□□ 1.06
TRIM28-201ENST00000253024 CDY1Q9Y6F8 540 aa21.65■■□□□ 1.06
TRIM28-201ENST00000253024 COL1A2P08123 1366 aa21.65■■□□□ 1.06
TRIM28-201ENST00000253024 SBK3P0C264 359 aa21.64■■□□□ 1.06
TRIM28-201ENST00000253024 ZNF470Q6ECI4 717 aa21.64■■□□□ 1.06
TRIM28-201ENST00000253024 MYLPFQ96A32 169 aa21.64■■□□□ 1.06
TRIM28-201ENST00000253024 ANKRD27Q96NW4 1050 aa21.64■■□□□ 1.06
TRIM28-201ENST00000253024 PTPN18Q99952 460 aa21.64■■□□□ 1.06
TRIM28-201ENST00000253024 SPON1Q9HCB6 807 aa21.64■■□□□ 1.06
TRIM28-201ENST00000253024 CCDC160A6NGH7 325 aa21.64■■□□□ 1.05
TRIM28-201ENST00000253024 GJB3O75712 270 aa21.64■■□□□ 1.05
TRIM28-201ENST00000253024 HARS2P49590 506 aaKnown RBP21.64■■□□□ 1.05
TRIM28-201ENST00000253024 PSEN2P49810 448 aa21.64■■□□□ 1.05
TRIM28-201ENST00000253024 RBM20Q5T481 1227 aaKnown RBP21.64■■□□□ 1.05
TRIM28-201ENST00000253024 SEL1L3Q68CR1 1132 aa21.64■■□□□ 1.05
TRIM28-201ENST00000253024 FBXL19Q6PCT2 694 aa21.64■■□□□ 1.05
TRIM28-201ENST00000253024 GK5Q6ZS86 529 aa21.64■■□□□ 1.05
TRIM28-201ENST00000253024 FBXW8Q8N3Y1 598 aa21.64■■□□□ 1.05
TRIM28-201ENST00000253024 PIP4K2CQ8TBX8 421 aa21.64■■□□□ 1.05
TRIM28-201ENST00000253024 KLHL5Q96PQ7 755 aa21.64■■□□□ 1.05
TRIM28-201ENST00000253024 MAF1Q9H063 256 aa21.64■■□□□ 1.05
TRIM28-201ENST00000253024 GBA3Q9H227 469 aa21.64■■□□□ 1.05
TRIM28-201ENST00000253024 GMPR2Q9P2T1 348 aaKnown RBP21.64■■□□□ 1.05
TRIM28-201ENST00000253024 DERAQ9Y315 318 aa21.64■■□□□ 1.05
TRIM28-201ENST00000253024 ANKRD12Q6UB98 2062 aa21.64■■□□□ 1.05
TRIM28-201ENST00000253024 RRN3P2A6NIE6 340 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 PEX1O43933 1283 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 CSPG5O95196 566 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 SLC4A1P02730 911 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 PAPOLAP51003 745 aaKnown RBP21.63■■□□□ 1.05
TRIM28-201ENST00000253024 MS4A2Q01362 244 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 TIGD5Q53EQ6 642 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 SH2D4BQ5SQS7 431 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 DNAJC28Q9NX36 388 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 ADA2Q9NZK5 511 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 FNDC3AQ9Y2H6 1198 aaKnown RBP21.63■■□□□ 1.05
TRIM28-201ENST00000253024 OR51F1A6NGY5 319 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 ITGB1P05556 798 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 BTKQ06187 659 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 PPIDQ08752 370 aaKnown RBP21.63■■□□□ 1.05
TRIM28-201ENST00000253024 PITRM1Q5JRX3 1037 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 FAM91A1Q658Y4 838 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 SCN4BQ8IWT1 228 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 DSELQ8IZU8 1212 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 RAB3IL1Q8TBN0 382 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 CNBD2Q96M20 576 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 CASS4Q9NQ75 786 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 XPOTO43592 962 aaKnown RBP21.63■■□□□ 1.05
TRIM28-201ENST00000253024 DLX3O60479 287 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 TRPA1O75762 1119 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 PGK1P00558 417 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 SLC35E2BP0CK96 405 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 DPP6P42658 865 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 MED21Q13503 144 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 PTPRCAPQ14761 206 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 PPP1R3AQ16821 1122 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 ARL13BQ3SXY8 428 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 CCDC153Q494R4 210 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 IYDQ6PHW0 289 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 CXCL17Q6UXB2 119 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 PLEKHH3Q7Z736 793 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 ZC3HC1Q86WB0 502 aaKnown RBP21.63■■□□□ 1.05
TRIM28-201ENST00000253024 SH3RF2Q8TEC5 729 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 EPAS1Q99814 870 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 TNFRSF12AQ9NP84 129 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 ST3GAL5Q9UNP4 418 aa21.63■■□□□ 1.05
TRIM28-201ENST00000253024 F2P00734 622 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 PIRTP0C851 137 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 PNPLA4P41247 253 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 RALGDSQ12967 914 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 FLOT2Q14254 428 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 CNSTQ6PJW8 725 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 SPATA24Q86W54 205 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 CENPLQ8N0S6 344 aaPredicted RBP21.62■■□□□ 1.05
TRIM28-201ENST00000253024 MS4A4AQ96JQ5 239 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 NAT9Q9BTE0 207 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 FSD1LQ9BXM9 530 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 KLHL4Q9C0H6 718 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 PCDHAC1Q9H158 963 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 TRPV6Q9H1D0 765 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 SF3B1O75533 1304 aaKnown RBP eCLIP21.62■■□□□ 1.053e-6■■■■■ 48.5
TRIM28-201ENST00000253024 KCNA5P22460 613 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 ETFBP38117 255 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 TAS2R39P59534 338 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 SHCBP1Q8NEM2 672 aa21.62■■□□□ 1.05
TRIM28-201ENST00000253024 BHLHE22Q8NFJ8 381 aaPredicted RBP21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms