RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 PPARGP37231 505 aaPredicted RBP19.02■□□□□ 0.64
CPSF3-201ENST00000238112 AVPR1AP37288 418 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 NAGLUP54802 743 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 ITGA7Q13683 1181 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 MFSD10Q14728 455 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 PPM1LQ5SGD2 360 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 TMC7Q7Z402 723 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 SETD3Q86TU7 594 aaPredicted RBP19.02■□□□□ 0.64
CPSF3-201ENST00000238112 LCA5Q86VQ0 697 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 EDEM1Q92611 657 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 CELF6Q96J87 481 aaKnown RBP19.02■□□□□ 0.64
CPSF3-201ENST00000238112 SENP8Q96LD8 212 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 C1QTNF1Q9BXJ1 281 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 VTI1BQ9UEU0 232 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 RUVBL2Q9Y230 463 aaKnown RBP19.02■□□□□ 0.64
CPSF3-201ENST00000238112 CDYLQ9Y232 598 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 TSC2P49815 1807 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 SLCO1B7G3V0H7 640 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 PTGESO14684 152 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 DDHD2O94830 711 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 SRGAP2BP0DMP2 458 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 TFEBP19484 476 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 CCR10P46092 362 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 DLG1Q12959 904 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 R3HDM1Q15032 1099 aaKnown RBP19.02■□□□□ 0.64
CPSF3-201ENST00000238112 BNC2Q6ZN30 1099 aaPredicted RBP19.02■□□□□ 0.64
CPSF3-201ENST00000238112 CTU1Q7Z7A3 348 aaKnown RBP19.02■□□□□ 0.64
CPSF3-201ENST00000238112 DSELQ8IZU8 1212 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 KCTD4Q8WVF5 259 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 ZFP42Q96MM3 310 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 KIFC1Q9BW19 673 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 RNF181Q9P0P0 153 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 C6orf203Q9P0P8 240 aaPredicted RBP19.02■□□□□ 0.64
CPSF3-201ENST00000238112 PACSIN3Q9UKS6 424 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 PSMD13Q9UNM6 376 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 SLC22A2O15244 555 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 LRIG2O94898 1065 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 RPL26P61254 145 aaKnown RBP19.01■□□□□ 0.63
CPSF3-201ENST00000238112 GRB14Q14449 540 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 UGP2Q16851 508 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 LIN52Q52LA3 116 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 NXNQ6DKJ4 435 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 USP33Q8TEY7 942 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 PCED1BQ96HM7 432 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 INPP5FQ9Y2H2 1132 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 DTNAQ9Y4J8 743 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 SBF1O95248 1867 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 TREHO43280 583 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 SLC35E2BP0CK96 405 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 IGFBP6P24592 240 aaPredicted RBP19.01■□□□□ 0.63
CPSF3-201ENST00000238112 ALDH1A3P47895 512 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 LHX1P48742 406 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 CSRP3P50461 194 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 COG7P83436 770 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 RBBP5Q15291 538 aaKnown RBP19.01■□□□□ 0.63
CPSF3-201ENST00000238112 RAB41Q5JT25 222 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 OTOP3Q7RTS5 596 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 PQLC1Q8N2U9 271 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 FSTL5Q8N475 847 aaPredicted RBP19.01■□□□□ 0.63
CPSF3-201ENST00000238112 TMEM151AQ8N4L1 468 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 ZMIZ2Q8NF64 920 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 RNF34Q969K3 372 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 BTBD9Q96Q07 612 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 PPP1R10Q96QC0 940 aaKnown RBP19.01■□□□□ 0.63
CPSF3-201ENST00000238112 CACNG4Q9UBN1 327 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 BCAP29Q9UHQ4 241 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 ZDHHC2Q9UIJ5 367 aa19.01■□□□□ 0.63
CPSF3-201ENST00000238112 AAR2Q9Y312 384 aaKnown RBP19.01■□□□□ 0.63
CPSF3-201ENST00000238112 MYBPHLA2RUH7 354 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 GRID2O43424 1007 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 SBK3P0C264 359 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 CD1EP15812 388 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 PGGT1BP53609 377 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 FLOT2Q14254 428 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 PDK3Q15120 406 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 OGFRL1Q5TC84 451 aaPredicted RBP19■□□□□ 0.63
CPSF3-201ENST00000238112 LRRC8EQ6NSJ5 796 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 SLC41A1Q8IVJ1 513 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 CPSF7Q8N684 471 aaKnown RBP19■□□□□ 0.63
CPSF3-201ENST00000238112 PIP4K2CQ8TBX8 421 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 STYXQ8WUJ0 223 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 CATSPER2Q96P56 530 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 CDRT15Q96T59 188 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 TSPYL2Q9H2G4 693 aaPredicted RBP19■□□□□ 0.63
CPSF3-201ENST00000238112 ACOT9Q9Y305 439 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 TIMM13Q9Y5L4 95 aaPredicted RBP19■□□□□ 0.63
CPSF3-201ENST00000238112 AHSGP02765 367 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 CHRM1P11229 460 aaPredicted RBP19■□□□□ 0.63
CPSF3-201ENST00000238112 COL6A2P12110 1019 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 GSTT1P30711 240 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 CXCR3P49682 368 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 CRYBB1P53674 252 aaPredicted RBP19■□□□□ 0.63
CPSF3-201ENST00000238112 PCID2Q5JVF3 399 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 LDLRAD1Q5T700 205 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 TMEM86AQ8N2M4 240 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 RCN3Q96D15 328 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 SPATA16Q9BXB7 569 aa19■□□□□ 0.63
CPSF3-201ENST00000238112 BTBD19C9JJ37 291 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 DFFAO00273 331 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 ADSLP30566 484 aaPredicted RBP18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms