RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 VWA5B1Q5TIE3 1220 aa3.13□□□□□ -1.91
SCN1A-208ENST00000625916 ARL6IP4Q66PJ3 421 aaKnown RBP3.13□□□□□ -1.91
SCN1A-208ENST00000625916 RINT1Q6NUQ1 792 aa3.13□□□□□ -1.91
SCN1A-208ENST00000625916 HIBCHQ6NVY1 386 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-208ENST00000625916 C14orf80Q86SX3 495 aa3.13□□□□□ -1.91
SCN1A-208ENST00000625916 TTC8Q8TAM2 541 aa3.13□□□□□ -1.91
SCN1A-208ENST00000625916 ZNF566Q969W8 418 aa3.13□□□□□ -1.91
SCN1A-208ENST00000625916 STARD7Q9NQZ5 370 aa3.13□□□□□ -1.91
SCN1A-208ENST00000625916 SLC52A1Q9NWF4 448 aa3.13□□□□□ -1.91
SCN1A-208ENST00000625916 SLC25A13Q9UJS0 675 aa3.13□□□□□ -1.91
SCN1A-208ENST00000625916 CEP83Q9Y592 693 aa3.13□□□□□ -1.91
SCN1A-208ENST00000625916 MMP24Q9Y5R2 645 aa3.13□□□□□ -1.91
SCN1A-208ENST00000625916 IGLV5-37A0A075B6J1 123 aa3.12□□□□□ -1.91
SCN1A-208ENST00000625916 C17orf102A2RUQ5 167 aa3.12□□□□□ -1.91
SCN1A-208ENST00000625916 HSPB6O14558 160 aa3.12□□□□□ -1.91
SCN1A-208ENST00000625916 HLA-DQA2P01906 255 aa3.12□□□□□ -1.91
SCN1A-208ENST00000625916 HOXB9P17482 250 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-208ENST00000625916 KLRK1P26718 216 aa3.12□□□□□ -1.91
SCN1A-208ENST00000625916 RFC1P35251 1148 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-208ENST00000625916 ARL16Q0P5N6 197 aa3.12□□□□□ -1.91
SCN1A-208ENST00000625916 ILF3Q12906 894 aaKnown RBP eCLIP3.12□□□□□ -1.91
SCN1A-208ENST00000625916 MYBPHQ13203 477 aa3.12□□□□□ -1.91
SCN1A-208ENST00000625916 IFIT5Q13325 482 aaKnown RBP3.12□□□□□ -1.91
SCN1A-208ENST00000625916 TYW3Q6IPR3 259 aaKnown RBP3.12□□□□□ -1.91
SCN1A-208ENST00000625916 ZNF771Q7L3S4 317 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-208ENST00000625916 ENDOVQ8N8Q3 282 aaKnown RBP3.12□□□□□ -1.91
SCN1A-208ENST00000625916 NEXN-AS1Q8NBZ9 246 aa3.12□□□□□ -1.91
SCN1A-208ENST00000625916 TMEM163Q8TC26 289 aa3.12□□□□□ -1.91
SCN1A-208ENST00000625916 NEK9Q8TD19 979 aa3.12□□□□□ -1.91
SCN1A-208ENST00000625916 UHRF2Q96PU4 802 aa3.12□□□□□ -1.91
SCN1A-208ENST00000625916 TBCBQ99426 244 aa3.12□□□□□ -1.91
SCN1A-208ENST00000625916 GAREM1Q9H706 876 aa3.12□□□□□ -1.91
SCN1A-208ENST00000625916 NECTIN3Q9NQS3 549 aa3.12□□□□□ -1.91
SCN1A-208ENST00000625916 KDM4EB2RXH2 506 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-208ENST00000625916 ATF3P18847 181 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 EEF1GP26641 437 aaKnown RBP3.11□□□□□ -1.91
SCN1A-208ENST00000625916 CLCNKBP51801 687 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 CRIP2P52943 208 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-208ENST00000625916 ST3GAL1Q11201 340 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 SF3A3Q12874 501 aaKnown RBP eCLIP3.11□□□□□ -1.91
SCN1A-208ENST00000625916 HDAC1Q13547 482 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-208ENST00000625916 PKP1Q13835 747 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 MYBPC2Q14324 1141 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 RAB30Q15771 203 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 SLC35G1Q2M3R5 365 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 PLEKHO1Q53GL0 409 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-208ENST00000625916 C9orf139Q6ZV77 190 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 NRSN1Q8IZ57 195 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 NAGSQ8N159 534 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 ANKRD44Q8N8A2 993 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 CD101Q93033 1021 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 BICD1Q96G01 975 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 MECRQ9BV79 373 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 IFT27Q9BW83 186 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 Q9N2J8 555 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 DDX21Q9NR30 783 aaKnown RBP eCLIP3.11□□□□□ -1.91
SCN1A-208ENST00000625916 SEL1LQ9UBV2 794 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 CNTN6Q9UQ52 1028 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 PCDHAC2Q9Y5I4 1007 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 WDR81Q562E7 1941 aa3.11□□□□□ -1.91
SCN1A-208ENST00000625916 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-208ENST00000625916 MAGEA13PA6NCF6 341 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 AGAP5A6NIR3 686 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 PRAC2D3DTV9 90 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 HNRNPDLO14979 420 aaKnown RBP3.1□□□□□ -1.91
SCN1A-208ENST00000625916 XPNPEP2O43895 674 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 CLDN7O95471 211 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 PAK4O96013 591 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-208ENST00000625916 LDLRP01130 860 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 AFPP02771 609 aaKnown RBP3.1□□□□□ -1.91
SCN1A-208ENST00000625916 MMP3P08254 477 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 PRKCHP24723 683 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 GSTM2P28161 218 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 GLIPR1P48060 266 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 VEGFCP49767 419 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 MXI1P50539 228 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 RCAN1P53805 252 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 ZACNQ401N2 412 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 SMIM29Q86T20 159 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 SERPINA11Q86U17 422 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 ZDHHC23Q8IYP9 409 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 CTCFLQ8NI51 663 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-208ENST00000625916 SECTM1Q8WVN6 248 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 TSR2Q969E8 191 aaKnown RBP3.1□□□□□ -1.91
SCN1A-208ENST00000625916 HDHD5Q9BXW7 423 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 LHPPQ9H008 270 aa3.1□□□□□ -1.91
SCN1A-208ENST00000625916 A0A1B0GVM2 712 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 TMEM247A6NEH6 219 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 MBD3L5A6NJ08 208 aaPredicted RBP3.09□□□□□ -1.91
SCN1A-208ENST00000625916 SLC38A8A6NNN8 435 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 TULP2O00295 520 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 RNMTO43148 476 aaKnown RBP3.09□□□□□ -1.91
SCN1A-208ENST00000625916 NCK2O43639 380 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 LARGE1O95461 756 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 NPPBP16860 134 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 ANOS1P23352 680 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 DGKAP23743 735 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 PRPH2P23942 346 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 TYK2P29597 1187 aa3.09□□□□□ -1.91
SCN1A-208ENST00000625916 PCP4P48539 62 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms