RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 DCNP07585 359 aaKnown RBP20.13■□□□□ 0.81
UPF3A-211ENST00000618700 SRPRAP08240 638 aaKnown RBP20.13■□□□□ 0.81
UPF3A-211ENST00000618700 PECAM1P16284 738 aaPredicted RBP20.13■□□□□ 0.81
UPF3A-211ENST00000618700 MAGEA9P43362 315 aa20.13■□□□□ 0.81
UPF3A-211ENST00000618700 STK19P49842 368 aaPredicted RBP20.13■□□□□ 0.81
UPF3A-211ENST00000618700 CLCN5P51795 746 aa20.13■□□□□ 0.81
UPF3A-211ENST00000618700 HSF5Q4G112 596 aaPredicted RBP20.13■□□□□ 0.81
UPF3A-211ENST00000618700 C2orf27AQ580R0 203 aa20.13■□□□□ 0.81
UPF3A-211ENST00000618700 ARHGAP36Q6ZRI8 547 aa20.13■□□□□ 0.81
UPF3A-211ENST00000618700 LRRC49Q8IUZ0 686 aa20.13■□□□□ 0.81
UPF3A-211ENST00000618700 RPLP0P6Q8NHW5 317 aa20.13■□□□□ 0.81
UPF3A-211ENST00000618700 ACOX2Q99424 681 aa20.13■□□□□ 0.81
UPF3A-211ENST00000618700 TMEM245Q9H330 911 aa20.13■□□□□ 0.81
UPF3A-211ENST00000618700 IPO11Q9UI26 975 aaKnown RBP20.13■□□□□ 0.81
UPF3A-211ENST00000618700 ZDBF2Q9HCK1 2354 aa20.13■□□□□ 0.81
UPF3A-211ENST00000618700 APOC4-APOC2K7ER74 178 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 SNPHO15079 494 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 MAFKO60675 156 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 TJP3O95049 919 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 MAP3K6O95382 1288 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 CD160O95971 181 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 APOC2P02655 101 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 MX2P20592 715 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 GARSP41250 739 aaKnown RBP20.12■□□□□ 0.81
UPF3A-211ENST00000618700 IL12RB1P42701 662 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 NR2C2P49116 596 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 ETF1P62495 437 aaKnown RBP20.12■□□□□ 0.81
UPF3A-211ENST00000618700 LINGO4Q6UY18 593 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 TRMT11Q7Z4G4 463 aaKnown RBP20.12■□□□□ 0.81
UPF3A-211ENST00000618700 ATPAF2Q8N5M1 289 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 ALLCQ8N6M5 410 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 PBXIP1Q96AQ6 731 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 RPL10LQ96L21 214 aaKnown RBP20.12■□□□□ 0.81
UPF3A-211ENST00000618700 NAPGQ99747 312 aaPredicted RBP20.12■□□□□ 0.81
UPF3A-211ENST00000618700 GABRG3Q99928 467 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 IER2Q9BTL4 223 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 ZDHHC4Q9NPG8 344 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 CACNA2D2Q9NY47 1150 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 SLC25A13Q9UJS0 675 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 HPCAL4Q9UM19 191 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 SNX12Q9UMY4 172 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 PLA2G4CQ9UP65 541 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 HEY1Q9Y5J3 304 aa20.12■□□□□ 0.81
UPF3A-211ENST00000618700 MYO18AQ92614 2054 aaKnown RBP20.12■□□□□ 0.81
UPF3A-211ENST00000618700 J3KR12 359 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 ATP9BO43861 1147 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 ADAM23O75077 832 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 KLF8O95600 359 aaPredicted RBP20.11■□□□□ 0.81
UPF3A-211ENST00000618700 MT-CO1P00395 513 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 NTSR1P30989 418 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 CXCR5P32302 372 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 SERPINH1P50454 418 aaKnown RBP20.11■□□□□ 0.81
UPF3A-211ENST00000618700 GEMIN4P57678 1058 aaKnown RBP20.11■□□□□ 0.81
UPF3A-211ENST00000618700 IL10RBQ08334 325 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 SLC20A2Q08357 652 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 FNDC3BQ53EP0 1204 aaKnown RBP20.11■□□□□ 0.81
UPF3A-211ENST00000618700 PAPD7Q5XG87 772 aaKnown RBP20.11■□□□□ 0.81
UPF3A-211ENST00000618700 RETSATQ6NUM9 610 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 ZNF354CQ86Y25 554 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 SLC13A5Q86YT5 568 aaPredicted RBP20.11■□□□□ 0.81
UPF3A-211ENST00000618700 CHPFQ8IZ52 775 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 FBXL6Q8N531 539 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 SH2D3CQ8N5H7 860 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 CCDC33Q8N5R6 958 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 HDAC11Q96DB2 347 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 TSGA13Q96PP4 275 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 OSBPL9Q96SU4 736 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 SAE1Q9UBE0 346 aaPredicted RBP20.11■□□□□ 0.81
UPF3A-211ENST00000618700 SLCO3A1Q9UIG8 710 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 MMP17Q9ULZ9 603 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 ACTL7AQ9Y615 435 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 STON1Q9Y6Q2 735 aa20.11■□□□□ 0.81
UPF3A-211ENST00000618700 TCRBV7S2A1N4TA0A589 114 aa20.1■□□□□ 0.81
UPF3A-211ENST00000618700 SGK1O00141 431 aa20.1■□□□□ 0.81
UPF3A-211ENST00000618700 CES2O00748 559 aa20.1■□□□□ 0.81
UPF3A-211ENST00000618700 PEX11BO96011 259 aa20.1■□□□□ 0.81
UPF3A-211ENST00000618700 SRCP12931 536 aa20.1■□□□□ 0.81
UPF3A-211ENST00000618700 PRKCHP24723 683 aa20.1■□□□□ 0.81
UPF3A-211ENST00000618700 ST8SIA6P61647 398 aa20.1■□□□□ 0.81
UPF3A-211ENST00000618700 NOMO1Q15155 1222 aa20.1■□□□□ 0.81
UPF3A-211ENST00000618700 SERPINA13PQ6UXR4 307 aa20.1■□□□□ 0.81
UPF3A-211ENST00000618700 ZSCAN30Q86W11 494 aa20.1■□□□□ 0.81
UPF3A-211ENST00000618700 TXNDC5Q8NBS9 432 aaKnown RBP20.1■□□□□ 0.81
UPF3A-211ENST00000618700 FRS2Q8WU20 508 aa20.1■□□□□ 0.81
UPF3A-211ENST00000618700 P3H4Q92791 437 aa20.1■□□□□ 0.81
UPF3A-211ENST00000618700 FATE1Q969F0 183 aa20.1■□□□□ 0.81
UPF3A-211ENST00000618700 HAUS1Q96CS2 278 aa20.1■□□□□ 0.81
UPF3A-211ENST00000618700 PBKQ96KB5 322 aa20.1■□□□□ 0.81
UPF3A-211ENST00000618700 SP110Q9HB58 689 aa20.1■□□□□ 0.81
UPF3A-211ENST00000618700 KMT2EQ8IZD2 1858 aa20.09■□□□□ 0.81
UPF3A-211ENST00000618700 ATG2BQ96BY7 2078 aa20.09■□□□□ 0.81
UPF3A-211ENST00000618700 CTAGE9A4FU28 777 aa20.09■□□□□ 0.81
UPF3A-211ENST00000618700 K7ERQ8 282 aa20.09■□□□□ 0.81
UPF3A-211ENST00000618700 OTUD4Q01804 1114 aaKnown RBP20.09■□□□□ 0.81
UPF3A-211ENST00000618700 ZNF33AQ06730 810 aa20.09■□□□□ 0.81
UPF3A-211ENST00000618700 PPIDQ08752 370 aaKnown RBP20.09■□□□□ 0.81
UPF3A-211ENST00000618700 PDK1Q15118 436 aa20.09■□□□□ 0.81
UPF3A-211ENST00000618700 INO80DQ53TQ3 878 aaPredicted RBP20.09■□□□□ 0.81
UPF3A-211ENST00000618700 LEKR1Q6ZMV7 388 aa20.09■□□□□ 0.81
UPF3A-211ENST00000618700 BZW1Q7L1Q6 419 aaKnown RBP20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms