RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 TRIM39Q9HCM9 518 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 UBE2TQ9NPD8 197 aaPredicted RBP10.4□□□□□ -0.74
VPS39-214ENST00000614932 TOPORSQ9NS56 1045 aaPredicted RBP10.4□□□□□ -0.74
VPS39-214ENST00000614932 CAB39Q9Y376 341 aaPredicted RBP10.4□□□□□ -0.74
VPS39-214ENST00000614932 C7orf72A4D263 438 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 ERVH48-1M5A8F1 160 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 FOXN3O00409 490 aaPredicted RBP10.4□□□□□ -0.74
VPS39-214ENST00000614932 EIF3DO15371 548 aaKnown RBP eCLIP10.4□□□□□ -0.74
VPS39-214ENST00000614932 SLC16A3O15427 465 aaKnown RBP10.4□□□□□ -0.74
VPS39-214ENST00000614932 DHRS4L1P0CG22 281 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 DBTP11182 482 aaKnown RBP10.4□□□□□ -0.74
VPS39-214ENST00000614932 HOXA7P31268 230 aaPredicted RBP10.4□□□□□ -0.74
VPS39-214ENST00000614932 MAN1A1P33908 653 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 MLLT10P55197 1068 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 IFITM3Q01628 133 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 BFSP1Q12934 665 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 LLGL1Q15334 1064 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 DLG2Q15700 870 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 C11orf63Q6NUN7 778 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 ZNF600Q6ZNG1 722 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 FKBP9P1Q75LS8 142 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 CBWD2Q8IUF1 395 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 ARMC8Q8IUR7 673 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 ARHGEF19Q8IW93 802 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 TCAIMQ8N3R3 496 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 EFCAB3Q8N7B9 438 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 SLC30A5Q8TAD4 765 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 LNX1Q8TBB1 728 aaPredicted RBP10.4□□□□□ -0.74
VPS39-214ENST00000614932 SLC20A1Q8WUM9 679 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 C1orf54Q8WWF1 131 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 ARHGEF26Q96DR7 871 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 CEP170P1Q96L14 293 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 LPIN3Q9BQK8 851 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 ADAM33Q9BZ11 813 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 FOXP3Q9BZS1 431 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 DNAI2Q9GZS0 605 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 ZNF229Q9UJW7 825 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 STRIP2Q9ULQ0 834 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 SLC27A5Q9Y2P5 690 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 CROCCQ5TZA2 2017 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 H0YC42 278 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 KLF11O14901 512 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 GFAPP14136 432 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 KRT20P35900 424 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 GRM5P41594 1212 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 STAT1P42224 750 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 HAAOP46952 286 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 AQP5P55064 265 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 TPD52P55327 224 aaPredicted RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 BNC2Q6ZN30 1099 aaPredicted RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 SLC22A16Q86VW1 577 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 ARID3BQ8IVW6 561 aaPredicted RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 BCL7CQ8WUZ0 217 aaPredicted RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 BSNDQ8WZ55 320 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 DACT3Q96B18 629 aaPredicted RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 REXO5Q96IC2 774 aaKnown RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 CNDP2Q96KP4 475 aaKnown RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 CEP19Q96LK0 163 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 ZNF560Q96MR9 790 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 UROC1Q96N76 676 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 CITED4Q96RK1 184 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 PKP2Q99959 881 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 NUP50Q9UKX7 468 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 COG5Q9UP83 839 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 PABPN1LA6NDY0 278 aaKnown RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 I3L4J1 428 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 RFPL2O75678 378 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 MTA2O94776 668 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 MAP3K6O95382 1288 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 DLATP10515 647 aaKnown RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 NCAM1P13591 858 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 HOXB1P14653 301 aaPredicted RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 ITGAXP20702 1163 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 RRM1P23921 792 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 EPHA3P29320 983 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 EEF1DP29692 281 aaKnown RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 MLLT3P42568 568 aaPredicted RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 CASP3P42574 277 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 HADHBP55084 474 aaKnown RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 MRPS22P82650 360 aaKnown RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 CNTN2Q02246 1040 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 CENPCQ03188 943 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 PDIA2Q13087 525 aaKnown RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 HERC3Q15034 1050 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 CLEC16AQ2KHT3 1053 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 IQSEC1Q6DN90 963 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 LYPD8Q6UX82 237 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 STXBP4Q6ZWJ1 553 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 APPL2Q8NEU8 664 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 ABHD11Q8NFV4 315 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 JPH3Q8WXH2 748 aaPredicted RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 TTC17Q96AE7 1141 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 EFHD1Q9BUP0 239 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 R3HDMLQ9H3Y0 253 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 VPS37BQ9H9H4 285 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 SAYSD1Q9NPB0 183 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 DIABLOQ9NR28 239 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 HSPBP1Q9NZL4 362 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 SEPT9Q9UHD8 586 aaPredicted RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 A0A1W2PQ72 361 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms