RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 SIN3BO75182 1162 aa16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 CD160O95971 181 aa16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 C7P10643 843 aa16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 VAV1P15498 845 aa16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 SERPINH1P50454 418 aaKnown RBP16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 CLCN6P51797 869 aa16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 ANKRD20A8PQ5CZ79 823 aa16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 ZNF354CQ86Y25 554 aa16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 TMPRSS6Q8IU80 811 aa16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 NETO2Q8NC67 525 aa16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 PCDH19Q8TAB3 1148 aa16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 KIAA1524Q8TCG1 905 aa16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 DDX56Q9NY93 547 aaKnown RBP16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 ACTL7AQ9Y615 435 aa16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 KRT1P04264 644 aa16.89■□□□□ 0.29
CCDC28A-202ENST00000611852 CCDC175P0C221 793 aa16.89■□□□□ 0.29
CCDC28A-202ENST00000611852 PAPOLAP51003 745 aaKnown RBP16.89■□□□□ 0.29
CCDC28A-202ENST00000611852 GEMIN4P57678 1058 aaKnown RBP16.89■□□□□ 0.29
CCDC28A-202ENST00000611852 IFI16Q16666 785 aaKnown RBP16.89■□□□□ 0.29
CCDC28A-202ENST00000611852 Q6ZVU0 165 aa16.89■□□□□ 0.29
CCDC28A-202ENST00000611852 VSIG1Q86XK7 387 aa16.89■□□□□ 0.29
CCDC28A-202ENST00000611852 TP53INP2Q8IXH6 220 aa16.89■□□□□ 0.29
CCDC28A-202ENST00000611852 TSGA10Q9BZW7 698 aa16.89■□□□□ 0.29
CCDC28A-202ENST00000611852 FBRSQ9HAH7 460 aa16.89■□□□□ 0.29
CCDC28A-202ENST00000611852 PRDM16Q9HAZ2 1276 aa16.89■□□□□ 0.29
CCDC28A-202ENST00000611852 ZSCAN5CA6NGD5 496 aaPredicted RBP16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 ARHGAP42A6NI28 874 aa16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 ZNF487B1APH4 448 aa16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 HRO43593 1189 aa16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 KRT86O43790 486 aa16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 ZNF821O75541 412 aaPredicted RBP16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 CNR2P34972 360 aa16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 NBL1P41271 181 aa16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 MARCKSL1P49006 195 aa16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 NHLH1Q02575 133 aa16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 SRSF5Q13243 272 aaKnown RBP16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 C22orf39Q6P5X5 142 aa16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 LEKR1Q6ZMV7 388 aa16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 RNF10Q8N5U6 811 aaKnown RBP16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 PQLC3Q8N755 202 aa16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 RNF25Q96BH1 459 aaPredicted RBP16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 SIPA1Q96FS4 1042 aa16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 FAM129BQ96TA1 746 aa16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 RSPH9Q9H1X1 276 aaPredicted RBP16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 NYNRINQ9P2P1 1898 aaKnown RBP16.88■□□□□ 0.29
CCDC28A-202ENST00000611852 DFFAO00273 331 aa16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 PALMO75781 387 aa16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 PTMAP06454 111 aaKnown RBP16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 CTNNA1P35221 906 aaKnown RBP16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 SERPINB6P35237 376 aa16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 ELAVL3Q14576 367 aaKnown RBP16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 USP39Q53GS9 565 aaKnown RBP16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 NCBP2-AS2Q69YL0 99 aa16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 KIAA1324Q6UXG2 1013 aaKnown RBP16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 ZNF662Q6ZS27 426 aa16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 METTL3Q86U44 580 aaKnown RBP16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 CACUL1Q86Y37 369 aa16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 KATNAL2Q8IYT4 538 aa16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 STK40Q8N2I9 435 aa16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 GAB3Q8WWW8 586 aa16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 PRCCQ92733 491 aaPredicted RBP16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 KRT35Q92764 455 aa16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 RNF157Q96PX1 679 aa16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 CEP44Q9C0F1 390 aa16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 KCNF1Q9H3M0 494 aa16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 PDFQ9HBH1 243 aa16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 GUCA1BQ9UMX6 200 aa16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 FCF1Q9Y324 198 aaKnown RBP16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 CAPN6Q9Y6Q1 641 aa16.87■□□□□ 0.29
CCDC28A-202ENST00000611852 J3KR12 359 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 PRAMEF11O60813 436 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 RPP40O75818 363 aaKnown RBP16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 P2RY2P41231 377 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 RPS14P62263 151 aaKnown RBP16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 PAFAH1B3Q15102 231 aaKnown RBP16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 MAP7D1Q3KQU3 841 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 INO80DQ53TQ3 878 aaPredicted RBP16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 ODF2Q5BJF6 829 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 MFSD7Q6UXD7 560 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 ARHGAP36Q6ZRI8 547 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 NT5DC3Q86UY8 548 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 OR2A12Q8NGT7 310 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 RLN3Q8WXF3 142 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 ISG20Q96AZ6 181 aaKnown RBP16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 TNKS2Q9H2K2 1166 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 CD93Q9NPY3 652 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 INVSQ9Y283 1065 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 PCDHA3Q9Y5H8 950 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 VPS13AQ96RL7 3174 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 MYO15AQ9UKN7 3530 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 MCF2LO15068 1137 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 MFSD11O43934 449 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 BNIP3LO60238 219 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 RNASEH1O60930 286 aaKnown RBP16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 ZNF217O75362 1048 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 CTNNA2P26232 953 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 CDKN2BP42772 138 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 ZBTB16Q05516 673 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 TAZQ16635 292 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms