RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 LRRN4Q8WUT4 740 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 CASKIN2Q8WXE0 1202 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 FAM3CQ92520 227 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 MAML1Q92585 1016 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 SHDQ96IW2 340 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 FERMT1Q9BQL6 677 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 USP29Q9HBJ7 922 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 ARHGEF3Q9NR81 526 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 UBA2Q9UBT2 640 aaPredicted RBP14.64□□□□□ -0.07
UPF1-211ENST00000600868 FEZ2Q9UHY8 353 aaPredicted RBP14.64□□□□□ -0.07
UPF1-211ENST00000600868 MUTYHQ9UIF7 546 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 HS3ST2Q9Y278 367 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 STARD13Q9Y3M8 1113 aa14.64□□□□□ -0.07
UPF1-211ENST00000600868 CD160O95971 181 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 SRPRAP08240 638 aaKnown RBP14.63□□□□□ -0.07
UPF1-211ENST00000600868 CCNB1P14635 433 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 VAV1P15498 845 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 RBL1P28749 1068 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 COILP38432 576 aaPredicted RBP14.63□□□□□ -0.07
UPF1-211ENST00000600868 RENBPP51606 427 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 CLCN6P51797 869 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 STARD6P59095 220 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 IFI35P80217 286 aaPredicted RBP14.63□□□□□ -0.07
UPF1-211ENST00000600868 LMNB2Q03252 620 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 HEATR6Q6AI08 1181 aaKnown RBP14.63□□□□□ -0.07
UPF1-211ENST00000600868 FSTL4Q6MZW2 842 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 CCDC137Q6PK04 289 aaKnown RBP14.63□□□□□ -0.07
UPF1-211ENST00000600868 ZNF852Q6ZMS4 543 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 B4GALNT4Q76KP1 1039 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 SFTPA1Q8IWL2 248 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 TEX26Q8N6G2 289 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 CEP112Q8N8E3 955 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 KDM1BQ8NB78 822 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 ATL2Q8NHH9 583 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 KCNV2Q8TDN2 545 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 NSMCE1Q8WV22 266 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 UCMAQ8WVF2 138 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 HTR3CQ8WXA8 447 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 RUNDC3BQ96NL0 473 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 NECAB3Q96P71 396 aaPredicted RBP14.63□□□□□ -0.07
UPF1-211ENST00000600868 TMEM121Q9BTD3 319 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 CIPCQ9C0C6 399 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 RBM12Q9NTZ6 932 aaKnown RBP14.63□□□□□ -0.07
UPF1-211ENST00000600868 PCYOX1Q9UHG3 505 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 SLC25A13Q9UJS0 675 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 FBXL21Q9UKT6 434 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 CA14Q9ULX7 337 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 ERVW-1Q9UQF0 538 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 ZNF148Q9UQR1 794 aa14.63□□□□□ -0.07
UPF1-211ENST00000600868 SHROOM3Q8TF72 1996 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 KRBA1A5PL33 1030 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 K7EQS6 105 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 KCNK1O00180 336 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 KCNN4O15554 427 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 MT-CO1P00395 513 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 CTSOP43234 321 aaPredicted RBP14.62□□□□□ -0.07
UPF1-211ENST00000600868 KCNJ1P48048 391 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 NUMBP49757 651 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 SERPINH1P50454 418 aaKnown RBP14.62□□□□□ -0.07
UPF1-211ENST00000600868 ZXDAP98168 799 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 WASHC5Q12768 1159 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 PTPRNQ16849 979 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 MARC1Q5VT66 337 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 TTC27Q6P3X3 843 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 LINGO4Q6UY18 593 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 SH2D3CQ8N5H7 860 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 CYB5D2Q8WUJ1 264 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 SORCS1Q8WY21 1168 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 EZH1Q92800 747 aaPredicted RBP14.62□□□□□ -0.07
UPF1-211ENST00000600868 RTP4Q96DX8 246 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 MRGPRX3Q96LB0 322 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 VAT1Q99536 393 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 IL12RB2Q99665 862 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 DDX47Q9H0S4 455 aaKnown RBP14.62□□□□□ -0.07
UPF1-211ENST00000600868 C10orf88Q9H8K7 445 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 THAP10Q9P2Z0 257 aaPredicted RBP14.62□□□□□ -0.07
UPF1-211ENST00000600868 AMACRQ9UHK6 382 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 PLA2G4CQ9UP65 541 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 MRPS17Q9Y2R5 130 aaKnown RBP14.62□□□□□ -0.07
UPF1-211ENST00000600868 F5P12259 2224 aa14.62□□□□□ -0.07
UPF1-211ENST00000600868 CTAGE15A4D2H0 777 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 C5orf60A6NFR6 353 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 NPC1O15118 1278 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 ATP9BO43861 1147 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 STK10O94804 968 aaKnown RBP14.61□□□□□ -0.07
UPF1-211ENST00000600868 EGFP01133 1207 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 JCHAINP01591 159 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 CTAGE8P0CG41 777 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 CHRM1P11229 460 aaPredicted RBP14.61□□□□□ -0.07
UPF1-211ENST00000600868 SRCP12931 536 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 HNRNPLP14866 589 aaKnown RBP eCLIP14.61□□□□□ -0.07
UPF1-211ENST00000600868 PTPN3P26045 913 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 NNMTP40261 264 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 MMP13P45452 471 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 STK19P49842 368 aaPredicted RBP14.61□□□□□ -0.07
UPF1-211ENST00000600868 SLC10A7Q0GE19 358 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 CCINQ13939 588 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 LBRQ14739 615 aaKnown RBP14.61□□□□□ -0.07
UPF1-211ENST00000600868 CYTH1Q15438 398 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 FBXO43Q4G163 708 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms