RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 CCDC170Q8IYT3 715 aa14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 CCDC112Q8NEF3 446 aa14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 ZMIZ2Q8NF64 920 aa14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 SMOQ99835 787 aa14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 KCNF1Q9H3M0 494 aa14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 FBXO44Q9H4M3 255 aa14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 FAM49BQ9NUQ9 324 aa14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 TSPAN16Q9UKR8 245 aa14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 PLA2G4CQ9UP65 541 aa14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 ARID1BQ8NFD5 2236 aaPredicted RBP14.34□□□□□ -0.11
SHKBP1-218ENST00000598907 USP9YO00507 2555 aaPredicted RBP14.33□□□□□ -0.11
SHKBP1-218ENST00000598907 A0A1W2PNU3 283 aaPredicted RBP14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 LRRC72A6NJI9 287 aa14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 LCA5LO95447 670 aa14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 PTMAP06454 111 aaKnown RBP14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 UNGP13051 313 aaPredicted RBP14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 TNFAIP3P21580 790 aa14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 RXRGP48443 463 aa14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 TDRD12Q587J7 1177 aaKnown RBP14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 TAF3Q5VWG9 929 aa14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 RAD9BQ6WBX8 426 aa14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 USP53Q70EK8 1073 aa14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 CHST9Q7L1S5 443 aa14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 DENND1CQ8IV53 801 aa14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 WDTC1Q8N5D0 677 aa14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 ANKRD52Q8NB46 1076 aa14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 SLC2A14Q8TDB8 520 aa14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 GOLGA1Q92805 767 aa14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 CCDC97Q96F63 343 aaPredicted RBP14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 CCNL2Q96S94 520 aaPredicted RBP14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 ABCG4Q9H172 646 aa14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 FBRSQ9HAH7 460 aa14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 COMMD8Q9NX08 183 aa14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 NAGPAQ9UK23 515 aa14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 MAN2B2Q9Y2E5 1009 aa14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 BSNQ9UPA5 3926 aa14.33□□□□□ -0.12
SHKBP1-218ENST00000598907 A0A087X0T9 212 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 BLACEA4D250 179 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 SOWAHDA6NJG2 315 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 MID1O15344 667 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 TIMM44O43615 452 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 LSM8O95777 96 aaKnown RBP14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 FAM228BP0C875 321 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 GZMAP12544 262 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 HLA-FP30511 346 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 GPD2P43304 727 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 ZNF211Q13398 564 aaPredicted RBP14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 SERINC3Q13530 473 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 SLC18A3Q16572 532 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 CLEC16AQ2KHT3 1053 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 GOLGA7BQ2TAP0 167 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 ARL13BQ3SXY8 428 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 DENND1BQ6P3S1 775 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 TRIM72Q6ZMU5 477 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 USP30Q70CQ3 517 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 OR2T34Q8NGX1 318 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 ATXN7L3BQ96GX2 97 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 CCDC42Q96M95 316 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 OMDQ99983 421 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 DUSP16Q9BY84 665 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 NEUROG2Q9H2A3 272 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 ERVMER34-1Q9H9K5 563 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 CSNK1G1Q9HCP0 422 aa14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 AGO1Q9UL18 857 aaKnown RBP14.32□□□□□ -0.12
SHKBP1-218ENST00000598907 EIF3CLB5ME19 914 aaKnown RBP14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 KRT38O76015 456 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 ADORA2BP29275 332 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 RPL34P49207 117 aaKnown RBP14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 KIF11P52732 1056 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 PPP2CBP62714 309 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 PPP2CAP67775 309 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 NOMO3P69849 1222 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 SKOR1P84550 965 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 CENPCQ03188 943 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 EFEMP1Q12805 493 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 SRSF6Q13247 344 aaKnown RBP14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 ISXQ2M1V0 245 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 VPS36Q86VN1 386 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 MAPK15Q8TD08 544 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 STK32AQ8WU08 396 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 SLC35F5Q8WV83 523 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 ZNF830Q96NB3 372 aaPredicted RBP14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 SLC46A1Q96NT5 459 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 EIF3CQ99613 913 aaKnown RBP14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 UBXN6Q9BZV1 441 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 RSPH9Q9H1X1 276 aaPredicted RBP14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 CAAP1Q9H8G2 361 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 ABCB8Q9NUT2 735 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 UCKL1Q9NWZ5 548 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 CYTH4Q9UIA0 394 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 ZNF510Q9Y2H8 683 aa14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 EPN1Q9Y6I3 576 aaPredicted RBP14.31□□□□□ -0.12
SHKBP1-218ENST00000598907 RELNP78509 3460 aa14.3□□□□□ -0.12
SHKBP1-218ENST00000598907 M0QYV0 167 aa14.3□□□□□ -0.12
SHKBP1-218ENST00000598907 AKR1B10O60218 316 aa14.3□□□□□ -0.12
SHKBP1-218ENST00000598907 NDUFA10O95299 355 aa14.3□□□□□ -0.12
SHKBP1-218ENST00000598907 FAM200BP0CF97 657 aa14.3□□□□□ -0.12
SHKBP1-218ENST00000598907 SETSIPP0DME0 302 aa14.3□□□□□ -0.12
SHKBP1-218ENST00000598907 HOXD9P28356 352 aaPredicted RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms