RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 ITIH4Q14624 930 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 SPRED3Q2MJR0 410 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 RNF187Q5TA31 235 aaPredicted RBP17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 TIGD7Q6NT04 549 aaPredicted RBP17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 PACS1Q6VY07 963 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 ZNF461Q8TAF7 563 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 MFSD3Q96ES6 412 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 CERS2Q96G23 380 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 ZNF512Q96ME7 567 aaPredicted RBP17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 ZNF558Q96NG5 402 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 RPRD1AQ96P16 312 aaPredicted RBP17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 FAM111AQ96PZ2 611 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 SRPK1Q96SB4 655 aaKnown RBP17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 ALG13Q9NP73 1137 aaKnown RBP17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 CHRAC1Q9NRG0 131 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 MYO1CO00159 1063 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 KIAA0754O94854 1291 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 DHRS4L1P0CG22 281 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 CCNFP41002 786 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 NPY2RP49146 381 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 SERPINB9P50453 376 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 DSG1Q02413 1049 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 MGAT5Q09328 741 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 CDH17Q12864 832 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 SEPT7Q16181 437 aaKnown RBP17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 ANKRD20A4Q4UJ75 823 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 NAPEPLDQ6IQ20 393 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 RASSF3Q86WH2 238 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 CHSY1Q86X52 802 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 LRRC49Q8IUZ0 686 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 IPMKQ8NFU5 416 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 AUTS2Q8WXX7 1259 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 ZNF75CPQ92670 426 aaPredicted RBP17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 MTBPQ96DY7 904 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 PITPNM3Q9BZ71 974 aa17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 AAR2Q9Y312 384 aaKnown RBP17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 USP15Q9Y4E8 981 aaPredicted RBP17.35■□□□□ 0.37
SHKBP1-216ENST00000598201 ZNF840PA6NDX5 716 aa17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 COPEO14579 308 aa17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 F7P08709 466 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 PRPF38BQ5VTL8 546 aaKnown RBP17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 FAM109BQ6ICB4 259 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 DENND5AQ6IQ26 1287 aa17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 SPATA21Q7Z572 469 aa17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 OTUD6BQ8N6M0 293 aa17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 ANKS4BQ8N8V4 417 aa17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 LRRC8CQ8TDW0 803 aa17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 CDKL2Q92772 493 aa17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 TMEM169Q96HH4 297 aa17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 KLHL5Q96PQ7 755 aa17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 YME1L1Q96TA2 773 aa17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 TBL1YQ9BQ87 522 aa17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 SLC13A1Q9BZW2 595 aa17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 CYP4F11Q9HBI6 524 aa17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 DNMT3LQ9UJW3 386 aa17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 PTPRSQ13332 1948 aa17.34■□□□□ 0.37
SHKBP1-216ENST00000598201 FAM237BA0A1B0GVD1 139 aa17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 GRXCR1A8MXD5 290 aa17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 PSMD3O43242 534 aa17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 ANXA9O76027 345 aa17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 USP1O94782 785 aa17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 ALADP13716 330 aa17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 TACR2P21452 398 aa17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 ATP5C1P36542 298 aaKnown RBP17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 NUMBP49757 651 aa17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 BTG3Q14201 252 aaPredicted RBP17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 SNX30Q5VWJ9 437 aa17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 CCT6BQ92526 530 aa17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 PTPRN2Q92932 1015 aa17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 PSMG2Q969U7 264 aa17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 CEP295NLQ96MC4 621 aa17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 ZNF778Q96MU6 729 aa17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 FICDQ9BVA6 458 aa17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 IL22Q9GZX6 179 aa17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 PCMTD2Q9NV79 361 aa17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 ZFATQ9P243 1243 aa17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 COLQQ9Y215 455 aaPredicted RBP17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 HBS1LQ9Y450 684 aaKnown RBP17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 INSL6Q9Y581 213 aa17.33■□□□□ 0.37
SHKBP1-216ENST00000598201 LAMA3Q16787 3333 aa17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 COCHO43405 550 aa17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 TLL1O43897 1013 aa17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 PMPCBO75439 489 aa17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 TOP3BO95985 862 aaKnown RBP17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 NMBRP28336 390 aa17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 SLC6A4P31645 630 aa17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 ADRA1AP35348 466 aa17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 HTRA4P83105 476 aaPredicted RBP17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 SLC10A7Q0GE19 358 aa17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 RFWD3Q6PCD5 774 aa17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 TIFABQ6ZNK6 161 aa17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 CCDC121Q6ZUS5 278 aa17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 LINC00523Q86TU6 105 aa17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 AGAP2Q99490 1192 aa17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 RAD9AQ99638 391 aa17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 VPS11Q9H270 941 aa17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 PRKAG3Q9UGI9 489 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms