RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 NECTIN4Q96NY8 510 aa10□□□□□ -0.81
LIG3-216ENST00000593099 PAAF1Q9BRP4 392 aa10□□□□□ -0.81
LIG3-216ENST00000593099 SYTL2Q9HCH5 934 aa10□□□□□ -0.81
LIG3-216ENST00000593099 ZNF212Q9UDV6 495 aa10□□□□□ -0.81
LIG3-216ENST00000593099 LNPEPQ9UIQ6 1025 aa10□□□□□ -0.81
LIG3-216ENST00000593099 EFR3BQ9Y2G0 817 aa10□□□□□ -0.81
LIG3-216ENST00000593099 RCCD1A6NED2 376 aa10□□□□□ -0.81
LIG3-216ENST00000593099 HCRTO43612 131 aa10□□□□□ -0.81
LIG3-216ENST00000593099 SPAG7O75391 227 aa10□□□□□ -0.81
LIG3-216ENST00000593099 AGTP01019 485 aa10□□□□□ -0.81
LIG3-216ENST00000593099 SERPIND1P05546 499 aa10□□□□□ -0.81
LIG3-216ENST00000593099 HNRNPCP07910 306 aaKnown RBP eCLIP10□□□□□ -0.81
LIG3-216ENST00000593099 GPR15P49685 360 aa10□□□□□ -0.81
LIG3-216ENST00000593099 PFKPQ01813 784 aa10□□□□□ -0.81
LIG3-216ENST00000593099 SLC20A2Q08357 652 aa10□□□□□ -0.81
LIG3-216ENST00000593099 RTP2Q5QGT7 225 aa10□□□□□ -0.81
LIG3-216ENST00000593099 ADGRF1Q5T601 910 aa10□□□□□ -0.81
LIG3-216ENST00000593099 MROH9Q5TGP6 573 aa10□□□□□ -0.81
LIG3-216ENST00000593099 SMYD5Q6GMV2 418 aa10□□□□□ -0.81
LIG3-216ENST00000593099 ACAD11Q709F0 780 aa10□□□□□ -0.81
LIG3-216ENST00000593099 MYO1HQ8N1T3 1032 aa10□□□□□ -0.81
LIG3-216ENST00000593099 SLC35F5Q8WV83 523 aa10□□□□□ -0.81
LIG3-216ENST00000593099 CASKIN2Q8WXE0 1202 aa10□□□□□ -0.81
LIG3-216ENST00000593099 MAML1Q92585 1016 aa10□□□□□ -0.81
LIG3-216ENST00000593099 LGMNQ99538 433 aa10□□□□□ -0.81
LIG3-216ENST00000593099 TRIM55Q9BYV6 548 aa10□□□□□ -0.81
LIG3-216ENST00000593099 CCSER2Q9H7U1 834 aa10□□□□□ -0.81
LIG3-216ENST00000593099 EML4Q9HC35 981 aaKnown RBP10□□□□□ -0.81
LIG3-216ENST00000593099 AASDHPPTQ9NRN7 309 aa10□□□□□ -0.81
LIG3-216ENST00000593099 COL4A5P29400 1685 aa10□□□□□ -0.81
LIG3-216ENST00000593099 USP12O75317 370 aa10□□□□□ -0.81
LIG3-216ENST00000593099 OAZ2O95190 189 aa10□□□□□ -0.81
LIG3-216ENST00000593099 KCNA5P22460 613 aa10□□□□□ -0.81
LIG3-216ENST00000593099 MGAT1P26572 445 aa10□□□□□ -0.81
LIG3-216ENST00000593099 RAB33AQ14088 237 aa10□□□□□ -0.81
LIG3-216ENST00000593099 LHX8Q68G74 356 aa10□□□□□ -0.81
LIG3-216ENST00000593099 ANKS1BQ7Z6G8 1248 aa10□□□□□ -0.81
LIG3-216ENST00000593099 CCDC197Q8NCU1 140 aa10□□□□□ -0.81
LIG3-216ENST00000593099 CLEC4CQ8WTT0 213 aa10□□□□□ -0.81
LIG3-216ENST00000593099 IRF7Q92985 503 aa10□□□□□ -0.81
LIG3-216ENST00000593099 KCTD15Q96SI1 283 aaPredicted RBP10□□□□□ -0.81
LIG3-216ENST00000593099 CDCA3Q99618 268 aaPredicted RBP10□□□□□ -0.81
LIG3-216ENST00000593099 MIR1-1HGQ9H1L0 117 aa10□□□□□ -0.81
LIG3-216ENST00000593099 PAK6Q9NQU5 681 aaPredicted RBP10□□□□□ -0.81
LIG3-216ENST00000593099 TRIM49D1C9J1S8 452 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 KIAA0355O15063 1070 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 PRNPP04156 253 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 TBCCQ15814 346 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 AGAP9Q5VTM2 703 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 LRIG3Q6UXM1 1119 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 OVCA2Q8WZ82 227 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 HES6Q96HZ4 224 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 KLHL5Q96PQ7 755 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 STRA6Q9BX79 667 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 PITPNM3Q9BZ71 974 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 ETNK2Q9NVF9 386 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 HECAQ9UBI9 543 aaPredicted RBP9.99□□□□□ -0.81
LIG3-216ENST00000593099 PCDHA11Q9Y5I1 949 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 ARAP2Q8WZ64 1704 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 TNS1Q9HBL0 1735 aaKnown RBP9.99□□□□□ -0.81
LIG3-216ENST00000593099 A0A1W2PQ67 120 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 PRPF4O43172 522 aaKnown RBP eCLIP9.99□□□□□ -0.81
LIG3-216ENST00000593099 LIASO43766 372 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 EDIL3O43854 480 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 ASLP04424 464 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 CTSEP14091 401 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 DDX5P17844 614 aaKnown RBP9.99□□□□□ -0.81
LIG3-216ENST00000593099 NCF2P19878 526 aaPredicted RBP9.99□□□□□ -0.81
LIG3-216ENST00000593099 MAXP61244 160 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 SLC29A2Q14542 456 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 CBX2Q14781 532 aaPredicted RBP9.99□□□□□ -0.81
LIG3-216ENST00000593099 NAA30Q147X3 362 aaPredicted RBP9.99□□□□□ -0.81
LIG3-216ENST00000593099 KIF19Q2TAC6 998 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 TMTC4Q5T4D3 741 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 SNX31Q8N9S9 440 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 FLCNQ8NFG4 579 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 SLC22A17Q8WUG5 538 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 TMEM159Q96B96 161 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 SPDL1Q96EA4 605 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 ATP6V1G3Q96LB4 118 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 HAPLN3Q96S86 360 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 C10orf88Q9H8K7 445 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 GRID1Q9ULK0 1009 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 PCDHB9Q9Y5E1 797 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 A0A1B0GUL6 1792 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 RHOP08100 348 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 OR56A5P0C7T3 313 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 CASP2P42575 452 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 PPP2R2AP63151 447 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 CDK18Q07002 472 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 STRA8Q7Z7C7 330 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 C12orf76Q8N812 135 aaPredicted RBP9.99□□□□□ -0.81
LIG3-216ENST00000593099 RTL3Q8N8U3 475 aaKnown RBP9.99□□□□□ -0.81
LIG3-216ENST00000593099 NTAN1Q96AB6 310 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 L2HGDHQ9H9P8 463 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 POLMQ9NP87 494 aaPredicted RBP9.99□□□□□ -0.81
LIG3-216ENST00000593099 PHIPQ8WWQ0 1821 aa9.99□□□□□ -0.81
LIG3-216ENST00000593099 MEI4A8MW99 385 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 ZW10O43264 779 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 HOXB8P17481 243 aaPredicted RBP9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms