RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 RTL10Q7L3V2 364 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 MPP5Q8N3R9 675 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.73□□□□□ -0.69
SS18-217ENST00000580958 TTC16Q8NEE8 873 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 OR7D4Q8NG98 312 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 FAM76AQ8TAV0 307 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 TLCD1Q96CP7 247 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 TCEAL4Q96EI5 215 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 OXNAD1Q96HP4 312 aaPredicted RBP10.73□□□□□ -0.69
SS18-217ENST00000580958 ZNF419Q96HQ0 510 aaPredicted RBP10.73□□□□□ -0.69
SS18-217ENST00000580958 SIGLEC10Q96LC7 697 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 NKX2-4Q9H2Z4 354 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 RETREG1Q9H6L5 497 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 CFAP97Q9P2B7 532 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 DNMT3BQ9UBC3 853 aaKnown RBP10.73□□□□□ -0.69
SS18-217ENST00000580958 LSM7Q9UK45 103 aaKnown RBP10.73□□□□□ -0.69
SS18-217ENST00000580958 TTLL3Q9Y4R7 772 aa10.73□□□□□ -0.69
SS18-217ENST00000580958 A0A1B0GVM2 712 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 TCAF2A6NFQ2 919 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 POC1B-GALNT4F8VUJ3 575 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 PSMD3O43242 534 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 CACNG3O60359 315 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 GREM1O60565 184 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 TBL1XO60907 577 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 USP12O75317 370 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 MOSPD3O75425 235 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 CLDN11O75508 207 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 NEBLO76041 1014 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 SUN1O94901 812 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 FGF19O95750 216 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 PEX11BO96011 259 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 C1RP00736 705 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 RHOCP08134 193 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 HNRNPA1P09651 372 aaKnown RBP eCLIP10.72□□□□□ -0.69
SS18-217ENST00000580958 PFKLP17858 780 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 MGAT1P26572 445 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 NUMBP49757 651 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 EPHA5P54756 1037 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 SESN2P58004 480 aaPredicted RBP10.72□□□□□ -0.69
SS18-217ENST00000580958 NTHL1P78549 312 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 GNA12Q03113 381 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 IL10RBQ08334 325 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 SERINC3Q13530 473 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 EFTUD2Q15029 972 aaKnown RBP eCLIP10.72□□□□□ -0.69
SS18-217ENST00000580958 TEAD2Q15562 447 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 GPR158Q5T848 1215 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 ZNF697Q5TEC3 545 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 KCTD11Q693B1 232 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 PDE12Q6L8Q7 609 aaKnown RBP10.72□□□□□ -0.69
SS18-217ENST00000580958 LEKR1Q6ZMV7 388 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 Q6ZNB5 142 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 ADGRD2Q7Z7M1 963 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 OR52K1Q8NGK4 314 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 FBF1Q8TES7 1133 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 NSMCE1Q8WV22 266 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 ARHGEF2Q92974 986 aaKnown RBP10.72□□□□□ -0.69
SS18-217ENST00000580958 FATE1Q969F0 183 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 LRRC39Q96DD0 335 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 PABPC5Q96DU9 382 aaKnown RBP10.72□□□□□ -0.69
SS18-217ENST00000580958 PGM2Q96G03 612 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 FCRL5Q96RD9 977 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 SLC46A2Q9BY10 475 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 NT5MQ9NPB1 228 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 PIH1D1Q9NWS0 290 aaKnown RBP10.72□□□□□ -0.69
SS18-217ENST00000580958 UBP1Q9NZI7 540 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 CTNNAL1Q9UBT7 734 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 ZC3H7BQ9UGR2 993 aaKnown RBP10.72□□□□□ -0.69
SS18-217ENST00000580958 RABGEF1Q9UJ41 708 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 STOML2Q9UJZ1 356 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 SH3BP1Q9Y3L3 701 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 MAD1L1Q9Y6D9 718 aa10.72□□□□□ -0.69
SS18-217ENST00000580958 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.71□□□□□ -0.69
SS18-217ENST00000580958 ERI2A8K979 691 aaKnown RBP10.71□□□□□ -0.69
SS18-217ENST00000580958 LEFTY2O00292 366 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 ARHGAP33O14559 1287 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 PRAMEF11O60813 436 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 XYLBO75191 536 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 AGTP01019 485 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 RHOP08100 348 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 NR1D1P20393 614 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 DDX6P26196 483 aaKnown RBP eCLIP10.71□□□□□ -0.69
SS18-217ENST00000580958 HOXD9P28356 352 aaPredicted RBP10.71□□□□□ -0.69
SS18-217ENST00000580958 GCAP28676 217 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 HOXA9P31269 272 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 HPDP32754 393 aaPredicted RBP10.71□□□□□ -0.69
SS18-217ENST00000580958 ETFBP38117 255 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 MMP13P45452 471 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 IFNAR2P48551 515 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 RENBPP51606 427 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 GEMP55040 296 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 OXCT1P55809 520 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 MAGOHP61326 146 aaKnown RBP10.71□□□□□ -0.69
SS18-217ENST00000580958 SLC10A7Q0GE19 358 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 ZNF177Q13360 481 aaPredicted RBP10.71□□□□□ -0.69
SS18-217ENST00000580958 HNRNPDQ14103 355 aaKnown RBP10.71□□□□□ -0.69
SS18-217ENST00000580958 TMED2Q15363 201 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 SLC5A9Q2M3M2 681 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 ARHGAP15Q53QZ3 475 aa10.71□□□□□ -0.69
SS18-217ENST00000580958 TTC39BQ5VTQ0 682 aaPredicted RBP10.71□□□□□ -0.69
SS18-217ENST00000580958 UNC5AQ6ZN44 842 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms