RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 MYO18AQ92614 2054 aaKnown RBP25.62■■□□□ 1.69
SHMT1-207ENST00000580002 SLC9A3R1O14745 358 aaPredicted RBP25.61■■□□□ 1.69
SHMT1-207ENST00000580002 KDELR3O43731 214 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 ZMPSTE24O75844 475 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 CD160O95971 181 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 PSMB4P28070 264 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 BASP1P80723 227 aaKnown RBP25.61■■□□□ 1.69
SHMT1-207ENST00000580002 GAB4Q2WGN9 574 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 FBXO38Q6PIJ6 1188 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 MAML1Q92585 1016 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 ART4Q93070 314 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 IL12RB2Q99665 862 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 FAM114A2Q9NRY5 505 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 RBM22Q9NW64 420 aaKnown RBP eCLIP25.61■■□□□ 1.69
SHMT1-207ENST00000580002 PAK5Q9P286 719 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 GJB3O75712 270 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 HLA-DQB2P05538 268 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 OXCT1P55809 520 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 IFI35P80217 286 aaPredicted RBP25.61■■□□□ 1.69
SHMT1-207ENST00000580002 ARF5P84085 180 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 IL10RBQ08334 325 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 RNASEH2BQ5TBB1 312 aaKnown RBP25.61■■□□□ 1.69
SHMT1-207ENST00000580002 ARHGEF18Q6ZSZ5 1173 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 PGBD5Q8N414 524 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 TEKT5Q96M29 485 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 VPS28Q9UK41 221 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 TPX2Q9ULW0 747 aaKnown RBP25.61■■□□□ 1.69
SHMT1-207ENST00000580002 NUMBLQ9Y6R0 609 aa25.61■■□□□ 1.69
SHMT1-207ENST00000580002 GOLGA8MH3BSY2 632 aa25.6■■□□□ 1.69
SHMT1-207ENST00000580002 MUSKO15146 869 aa25.6■■□□□ 1.69
SHMT1-207ENST00000580002 MT-CO1P00395 513 aa25.6■■□□□ 1.69
SHMT1-207ENST00000580002 SLC6A11P48066 632 aa25.6■■□□□ 1.69
SHMT1-207ENST00000580002 MAXP61244 160 aa25.6■■□□□ 1.69
SHMT1-207ENST00000580002 ZNF33AQ06730 810 aa25.6■■□□□ 1.69
SHMT1-207ENST00000580002 FCHO2Q0JRZ9 810 aa25.6■■□□□ 1.69
SHMT1-207ENST00000580002 HIBCHQ6NVY1 386 aaPredicted RBP25.6■■□□□ 1.69
SHMT1-207ENST00000580002 LRRC49Q8IUZ0 686 aa25.6■■□□□ 1.69
SHMT1-207ENST00000580002 NECTIN4Q96NY8 510 aa25.6■■□□□ 1.69
SHMT1-207ENST00000580002 DNAJC17Q9NVM6 304 aaKnown RBP25.6■■□□□ 1.69
SHMT1-207ENST00000580002 GTSE1Q9NYZ3 720 aa25.6■■□□□ 1.69
SHMT1-207ENST00000580002 MARK1Q9P0L2 795 aa25.6■■□□□ 1.69
SHMT1-207ENST00000580002 WHRNQ9P202 907 aa25.6■■□□□ 1.69
SHMT1-207ENST00000580002 ANAPC5Q9UJX4 755 aa25.6■■□□□ 1.69
SHMT1-207ENST00000580002 TTLL3Q9Y4R7 772 aa25.6■■□□□ 1.69
SHMT1-207ENST00000580002 C2CD4DB7Z1M9 353 aa25.59■■□□□ 1.69
SHMT1-207ENST00000580002 TMEM63AO94886 807 aa25.59■■□□□ 1.69
SHMT1-207ENST00000580002 ADH5P11766 374 aa25.59■■□□□ 1.69
SHMT1-207ENST00000580002 H2AFXP16104 143 aaPredicted RBP25.59■■□□□ 1.69
SHMT1-207ENST00000580002 ITIH2P19823 946 aa25.59■■□□□ 1.69
SHMT1-207ENST00000580002 NFKB1P19838 968 aa25.59■■□□□ 1.69
SHMT1-207ENST00000580002 TNFRSF8P28908 595 aa25.59■■□□□ 1.69
SHMT1-207ENST00000580002 CTSOP43234 321 aaPredicted RBP25.59■■□□□ 1.69
SHMT1-207ENST00000580002 MTM1Q13496 603 aa25.59■■□□□ 1.69
SHMT1-207ENST00000580002 OLIG2Q13516 323 aa25.59■■□□□ 1.69
SHMT1-207ENST00000580002 TIGD7Q6NT04 549 aaPredicted RBP25.59■■□□□ 1.69
SHMT1-207ENST00000580002 ELSPBP1Q96BH3 223 aa25.59■■□□□ 1.69
SHMT1-207ENST00000580002 VPS51Q9UID3 782 aa25.59■■□□□ 1.69
SHMT1-207ENST00000580002 FARP1Q9Y4F1 1045 aaPredicted RBP25.59■■□□□ 1.69
SHMT1-207ENST00000580002 ACTN2P35609 894 aa25.59■■□□□ 1.69
SHMT1-207ENST00000580002 CUL1Q13616 776 aa25.59■■□□□ 1.69
SHMT1-207ENST00000580002 IHHQ14623 411 aa25.59■■□□□ 1.69
SHMT1-207ENST00000580002 LRRC45Q96CN5 670 aa25.59■■□□□ 1.69
SHMT1-207ENST00000580002 ECT2Q9H8V3 914 aa25.59■■□□□ 1.69
SHMT1-207ENST00000580002 NT5MQ9NPB1 228 aa25.59■■□□□ 1.69
SHMT1-207ENST00000580002 UBP1Q9NZI7 540 aa25.59■■□□□ 1.69
SHMT1-207ENST00000580002 KIAA1522Q9P206 1035 aaPredicted RBP25.59■■□□□ 1.69
SHMT1-207ENST00000580002 EPS15L1Q9UBC2 864 aa25.59■■□□□ 1.69
SHMT1-207ENST00000580002 K7ERQ8 282 aa25.58■■□□□ 1.69
SHMT1-207ENST00000580002 OPHN1O60890 802 aa25.58■■□□□ 1.69
SHMT1-207ENST00000580002 PSMC3P17980 439 aa25.58■■□□□ 1.69
SHMT1-207ENST00000580002 GDI1P31150 447 aa25.58■■□□□ 1.69
SHMT1-207ENST00000580002 LBRQ14739 615 aaKnown RBP25.58■■□□□ 1.69
SHMT1-207ENST00000580002 PLEKHG6Q3KR16 790 aa25.58■■□□□ 1.69
SHMT1-207ENST00000580002 FUT11Q495W5 492 aa25.58■■□□□ 1.69
SHMT1-207ENST00000580002 TMEM215Q68D42 235 aa25.58■■□□□ 1.69
SHMT1-207ENST00000580002 NAT8LQ8N9F0 302 aa25.58■■□□□ 1.69
SHMT1-207ENST00000580002 SPATA22Q8NHS9 363 aa25.58■■□□□ 1.69
SHMT1-207ENST00000580002 CCHCR1Q8TD31 782 aa25.58■■□□□ 1.69
SHMT1-207ENST00000580002 PRDM6Q9NQX0 595 aa25.58■■□□□ 1.69
SHMT1-207ENST00000580002 THG1LQ9NWX6 298 aaKnown RBP25.58■■□□□ 1.69
SHMT1-207ENST00000580002 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP25.57■■□□□ 1.68
SHMT1-207ENST00000580002 MTSS1O43312 755 aa25.57■■□□□ 1.68
SHMT1-207ENST00000580002 STK10O94804 968 aaKnown RBP25.57■■□□□ 1.68
SHMT1-207ENST00000580002 GRIA1P42261 906 aa25.57■■□□□ 1.68
SHMT1-207ENST00000580002 SMAD4Q13485 552 aaKnown RBP25.57■■□□□ 1.68
SHMT1-207ENST00000580002 HTR4Q13639 388 aa25.57■■□□□ 1.68
SHMT1-207ENST00000580002 HNRNPDQ14103 355 aaKnown RBP25.57■■□□□ 1.68
SHMT1-207ENST00000580002 SPARCL1Q14515 664 aa25.57■■□□□ 1.68
SHMT1-207ENST00000580002 KCNJ11Q14654 390 aa25.57■■□□□ 1.68
SHMT1-207ENST00000580002 MARC1Q5VT66 337 aa25.57■■□□□ 1.68
SHMT1-207ENST00000580002 GPR153Q6NV75 609 aa25.57■■□□□ 1.68
SHMT1-207ENST00000580002 ZNF783Q6ZMS7 281 aa25.57■■□□□ 1.68
SHMT1-207ENST00000580002 TEX26Q8N6G2 289 aa25.57■■□□□ 1.68
SHMT1-207ENST00000580002 ANKRD7Q92527 254 aa25.57■■□□□ 1.68
SHMT1-207ENST00000580002 PRCCQ92733 491 aaPredicted RBP25.57■■□□□ 1.68
SHMT1-207ENST00000580002 CISD3P0C7P0 127 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 CALCOCO2Q13137 446 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 CYTH1Q15438 398 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 GEN1Q17RS7 908 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 PITRM1Q5JRX3 1037 aa25.56■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms