RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 MARK1Q9P0L2 795 aa13.96□□□□□ -0.17
CCDC40-209ENST00000573474 KIAA1522Q9P206 1035 aaPredicted RBP13.96□□□□□ -0.17
CCDC40-209ENST00000573474 RSPH14Q9UHP6 348 aa13.96□□□□□ -0.17
CCDC40-209ENST00000573474 OR51B4Q9Y5P0 310 aa13.96□□□□□ -0.17
CCDC40-209ENST00000573474 TCRBV7S3A2A0A539 114 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 PSMD3O43242 534 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 CACNG3O60359 315 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 PPFIA2O75334 1257 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 APRTP07741 180 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 NFKB1P19838 968 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 PSMB4P28070 264 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 MZF1P28698 734 aaPredicted RBP13.95□□□□□ -0.18
CCDC40-209ENST00000573474 GBP2P32456 591 aaPredicted RBP13.95□□□□□ -0.18
CCDC40-209ENST00000573474 HSPA9P38646 679 aaKnown RBP13.95□□□□□ -0.18
CCDC40-209ENST00000573474 CSKP41240 450 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 LMAN1P49257 510 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 DHX9Q08211 1270 aaKnown RBP13.95□□□□□ -0.18
CCDC40-209ENST00000573474 SLC12A1Q13621 1099 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 PRPSAP1Q14558 356 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 RFTN1Q14699 578 aaPredicted RBP13.95□□□□□ -0.18
CCDC40-209ENST00000573474 LBRQ14739 615 aaKnown RBP13.95□□□□□ -0.18
CCDC40-209ENST00000573474 LY6G5CQ5SRR4 150 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 TMCO4Q5TGY1 634 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 PRPF38BQ5VTL8 546 aaKnown RBP13.95□□□□□ -0.18
CCDC40-209ENST00000573474 HDXQ7Z353 690 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 TMC3Q7Z5M5 1100 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 MICALL1Q8N3F8 863 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 BBS5Q8N3I7 341 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 MREGQ8N565 214 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 MCUQ8NE86 351 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 WFDC5Q8TCV5 224 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 FAM161BQ96MY7 647 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 GDAP1L1Q96MZ0 367 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 FCRL5Q96RD9 977 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 MYADMQ96S97 322 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 BBS2Q9BXC9 721 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 TXLNGYQ9BZA5 131 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 PDFQ9HBH1 243 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 EIF2B3Q9NR50 452 aaKnown RBP13.95□□□□□ -0.18
CCDC40-209ENST00000573474 HAUS2Q9NVX0 235 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 CD207Q9UJ71 328 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 VPS28Q9UK41 221 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 ATP8A1Q9Y2Q0 1164 aa13.95□□□□□ -0.18
CCDC40-209ENST00000573474 PRRC2BQ5JSZ5 2229 aaKnown RBP13.95□□□□□ -0.18
CCDC40-209ENST00000573474 NUP210Q8TEM1 1887 aaPredicted RBP13.95□□□□□ -0.18
CCDC40-209ENST00000573474 GOLGA6CA6NDK9 693 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 GOLGA6BA6NDN3 693 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 NEDD8-MDP1E9PL57 170 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 GOLGA8MH3BSY2 632 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 CBX4O00257 560 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 ATP8B1O43520 1251 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 TMEM63AO94886 807 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 HLA-DQB2P05538 268 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 GOLGA6DP0CG33 693 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 LAMP2P13473 410 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 TYRP14679 529 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 FCARP24071 287 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 MMP13P45452 471 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 PLK1P53350 603 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 ARL4CP56559 192 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 SARNPP82979 210 aaKnown RBP13.94□□□□□ -0.18
CCDC40-209ENST00000573474 SLC10A7Q0GE19 358 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 LMAN2Q12907 356 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 PDGFRLQ15198 375 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 DHCR24Q15392 516 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 EML3Q32P44 896 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 TANGO2Q6ICL3 276 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 OTOP3Q7RTS5 596 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 CCDC25Q86WR0 208 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 SMRP1Q8NCR6 262 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 ALG14Q96F25 216 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 LRCH3Q96II8 777 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 LMLNQ96KR4 655 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 SLC2A11Q9BYW1 496 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 PHACTR1Q9C0D0 580 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 NT5MQ9NPB1 228 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 GOLGA6AQ9NYA3 693 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 UBA2Q9UBT2 640 aaPredicted RBP13.94□□□□□ -0.18
CCDC40-209ENST00000573474 CLEC4EQ9ULY5 219 aa13.94□□□□□ -0.18
CCDC40-209ENST00000573474 NYNRINQ9P2P1 1898 aaKnown RBP13.93□□□□□ -0.18
CCDC40-209ENST00000573474 ERI2A8K979 691 aaKnown RBP13.93□□□□□ -0.18
CCDC40-209ENST00000573474 F5H423 210 aaPredicted RBP13.93□□□□□ -0.18
CCDC40-209ENST00000573474 EIF3HO15372 352 aaKnown RBP eCLIP13.93□□□□□ -0.18
CCDC40-209ENST00000573474 ZMPSTE24O75844 475 aa13.93□□□□□ -0.18
CCDC40-209ENST00000573474 ANXA9O76027 345 aa13.93□□□□□ -0.18
CCDC40-209ENST00000573474 NFATC1O95644 943 aa13.93□□□□□ -0.18
CCDC40-209ENST00000573474 ADH1CP00326 375 aa13.93□□□□□ -0.18
CCDC40-209ENST00000573474 GLDCP23378 1020 aa13.93□□□□□ -0.18
CCDC40-209ENST00000573474 GAD2Q05329 585 aa13.93□□□□□ -0.18
CCDC40-209ENST00000573474 CBLBQ13191 982 aa13.93□□□□□ -0.18
CCDC40-209ENST00000573474 ZNF235Q14590 738 aa13.93□□□□□ -0.18
CCDC40-209ENST00000573474 CASP8Q14790 479 aa13.93□□□□□ -0.18
CCDC40-209ENST00000573474 HIF1AQ16665 826 aa13.93□□□□□ -0.18
CCDC40-209ENST00000573474 SPDYCQ5MJ68 293 aa13.93□□□□□ -0.18
CCDC40-209ENST00000573474 LEKR1Q6ZMV7 388 aa13.93□□□□□ -0.18
CCDC40-209ENST00000573474 CENPUQ71F23 418 aa13.93□□□□□ -0.18
CCDC40-209ENST00000573474 RELL1Q8IUW5 271 aa13.93□□□□□ -0.18
CCDC40-209ENST00000573474 MFSD6LQ8IWD5 586 aa13.93□□□□□ -0.18
CCDC40-209ENST00000573474 KLHDC8BQ8IXV7 354 aa13.93□□□□□ -0.18
CCDC40-209ENST00000573474 PDIK1LQ8N165 341 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms