RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ZNF18P17022 549 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 MAT2AP31153 395 aaKnown RBP17.54■□□□□ 0.4
CLN3-216ENST00000565316 SULT1E1P49888 294 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 CLCN6P51797 869 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 RNASE9P60153 205 aaKnown RBP17.54■□□□□ 0.4
CLN3-216ENST00000565316 DEUP1Q05D60 604 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 CYP4F3Q08477 520 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 BNIP3Q12983 259 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 DPCR1Q3MIW9 517 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 POM121L1PQ3SYA9 428 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 SETMARQ53H47 684 aaPredicted RBP17.54■□□□□ 0.4
CLN3-216ENST00000565316 CCDC157Q569K6 752 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 C19orf48Q6RUI8 117 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 EID2Q8N6I1 236 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 OR2A12Q8NGT7 310 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 TBCBQ99426 244 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 SCUBE2Q9NQ36 999 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 ZNF212Q9UDV6 495 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 SNX10Q9Y5X0 201 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 FHOD1Q9Y613 1164 aa17.54■□□□□ 0.4
CLN3-216ENST00000565316 URB1O60287 2271 aaKnown RBP17.54■□□□□ 0.4
CLN3-216ENST00000565316 ADAMTS20P59510 1910 aa17.53■□□□□ 0.4
CLN3-216ENST00000565316 PRAMEF26H0Y7S4 382 aa17.53■□□□□ 0.4
CLN3-216ENST00000565316 K7ERQ8 282 aa17.53■□□□□ 0.4
CLN3-216ENST00000565316 SMAD6O43541 496 aaKnown RBP17.53■□□□□ 0.4
CLN3-216ENST00000565316 RNGTTO60942 597 aaKnown RBP17.53■□□□□ 0.4
CLN3-216ENST00000565316 CHRNA3P32297 505 aa17.53■□□□□ 0.4
CLN3-216ENST00000565316 FLT3P36888 993 aa17.53■□□□□ 0.4
CLN3-216ENST00000565316 ACADVLP49748 655 aa17.53■□□□□ 0.4
CLN3-216ENST00000565316 DNAJC3Q13217 504 aa17.53■□□□□ 0.4
CLN3-216ENST00000565316 STAT4Q14765 748 aa17.53■□□□□ 0.4
CLN3-216ENST00000565316 FAM102AQ5T9C2 384 aaPredicted RBP17.53■□□□□ 0.4
CLN3-216ENST00000565316 NEK5Q6P3R8 708 aa17.53■□□□□ 0.4
CLN3-216ENST00000565316 LRRC31Q6UY01 552 aa17.53■□□□□ 0.4
CLN3-216ENST00000565316 ARCQ7LC44 396 aa17.53■□□□□ 0.4
CLN3-216ENST00000565316 ERICH1Q86X53 443 aa17.53■□□□□ 0.4
CLN3-216ENST00000565316 DCAF4L2Q8NA75 395 aa17.53■□□□□ 0.4
CLN3-216ENST00000565316 ATP11CQ8NB49 1132 aa17.53■□□□□ 0.4
CLN3-216ENST00000565316 TMEM145Q8NBT3 493 aa17.53■□□□□ 0.4
CLN3-216ENST00000565316 HAPLN3Q96S86 360 aa17.53■□□□□ 0.4
CLN3-216ENST00000565316 PDCL3Q9H2J4 239 aa17.53■□□□□ 0.4
CLN3-216ENST00000565316 TMEM59LQ9UK28 342 aa17.53■□□□□ 0.4
CLN3-216ENST00000565316 FARP1Q9Y4F1 1045 aaPredicted RBP17.53■□□□□ 0.4
CLN3-216ENST00000565316 ARID1BQ8NFD5 2236 aaPredicted RBP17.53■□□□□ 0.4
CLN3-216ENST00000565316 A0A0D9SEW6 157 aa17.52■□□□□ 0.4
CLN3-216ENST00000565316 ILVBLA1L0T0 632 aa17.52■□□□□ 0.4
CLN3-216ENST00000565316 RFPL3O75679 317 aa17.52■□□□□ 0.4
CLN3-216ENST00000565316 UCHL3P15374 230 aa17.52■□□□□ 0.4
CLN3-216ENST00000565316 RRM1P23921 792 aa17.52■□□□□ 0.4
CLN3-216ENST00000565316 CCDC15Q0P6D6 951 aa17.52■□□□□ 0.4
CLN3-216ENST00000565316 RAPGEF1Q13905 1077 aa17.52■□□□□ 0.4
CLN3-216ENST00000565316 COL28A1Q2UY09 1125 aa17.52■□□□□ 0.4
CLN3-216ENST00000565316 C6orf118Q5T5N4 469 aa17.52■□□□□ 0.4
CLN3-216ENST00000565316 TRNP1Q6NT89 227 aa17.52■□□□□ 0.4
CLN3-216ENST00000565316 NOP9Q86U38 636 aaKnown RBP17.52■□□□□ 0.4
CLN3-216ENST00000565316 ARRDC3Q96B67 414 aa17.52■□□□□ 0.4
CLN3-216ENST00000565316 CCDC114Q96M63 670 aa17.52■□□□□ 0.4
CLN3-216ENST00000565316 HDAC8Q9BY41 377 aa17.52■□□□□ 0.4
CLN3-216ENST00000565316 STK33Q9BYT3 514 aa17.52■□□□□ 0.4
CLN3-216ENST00000565316 TMPRSS4Q9NRS4 437 aa17.52■□□□□ 0.4
CLN3-216ENST00000565316 MPP6Q9NZW5 540 aa17.52■□□□□ 0.4
CLN3-216ENST00000565316 SMG1Q96Q15 3661 aaKnown RBP17.52■□□□□ 0.4
CLN3-216ENST00000565316 BNIP3LO60238 219 aa17.51■□□□□ 0.39
CLN3-216ENST00000565316 ZNF821O75541 412 aaPredicted RBP17.51■□□□□ 0.39
CLN3-216ENST00000565316 ZMPSTE24O75844 475 aa17.51■□□□□ 0.39
CLN3-216ENST00000565316 ENDOD1O94919 500 aa17.51■□□□□ 0.39
CLN3-216ENST00000565316 PRNPP04156 253 aa17.51■□□□□ 0.39
CLN3-216ENST00000565316 ILKQ13418 452 aa17.51■□□□□ 0.39
CLN3-216ENST00000565316 ZNF284Q2VY69 593 aa17.51■□□□□ 0.39
CLN3-216ENST00000565316 CT47A1Q5JQC4 288 aaPredicted RBP17.51■□□□□ 0.39
CLN3-216ENST00000565316 TAF3Q5VWG9 929 aa17.51■□□□□ 0.39
CLN3-216ENST00000565316 ZNF783Q6ZMS7 281 aa17.51■□□□□ 0.39
CLN3-216ENST00000565316 TFAP2DQ7Z6R9 452 aa17.51■□□□□ 0.39
CLN3-216ENST00000565316 PDZD3Q86UT5 571 aa17.51■□□□□ 0.39
CLN3-216ENST00000565316 CHST14Q8NCH0 376 aa17.51■□□□□ 0.39
CLN3-216ENST00000565316 CHMP5Q9NZZ3 219 aa17.51■□□□□ 0.39
CLN3-216ENST00000565316 DACH1Q9UI36 760 aa17.51■□□□□ 0.39
CLN3-216ENST00000565316 CA5BQ9Y2D0 317 aa17.51■□□□□ 0.39
CLN3-216ENST00000565316 A0A087WV48 116 aa17.5■□□□□ 0.39
CLN3-216ENST00000565316 A0A1W2PQU0 124 aa17.5■□□□□ 0.39
CLN3-216ENST00000565316 F8VZ95 297 aa17.5■□□□□ 0.39
CLN3-216ENST00000565316 RNF103O00237 685 aa17.5■□□□□ 0.39
CLN3-216ENST00000565316 KPNA3O00505 521 aaPredicted RBP17.5■□□□□ 0.39
CLN3-216ENST00000565316 CKMT2P17540 419 aa17.5■□□□□ 0.39
CLN3-216ENST00000565316 OR1E1P30953 314 aa17.5■□□□□ 0.39
CLN3-216ENST00000565316 SLC20A2Q08357 652 aa17.5■□□□□ 0.39
CLN3-216ENST00000565316 HSP90AA4PQ58FG1 418 aa17.5■□□□□ 0.39
CLN3-216ENST00000565316 C22orf39Q6P5X5 142 aa17.5■□□□□ 0.39
CLN3-216ENST00000565316 FBXL19Q6PCT2 694 aa17.5■□□□□ 0.39
CLN3-216ENST00000565316 LINGO4Q6UY18 593 aa17.5■□□□□ 0.39
CLN3-216ENST00000565316 HORMAD1Q86X24 394 aa17.5■□□□□ 0.39
CLN3-216ENST00000565316 OR7D4Q8NG98 312 aa17.5■□□□□ 0.39
CLN3-216ENST00000565316 EPS8L1Q8TE68 723 aa17.5■□□□□ 0.39
CLN3-216ENST00000565316 KLHDC7BQ96G42 594 aa17.5■□□□□ 0.39
CLN3-216ENST00000565316 CEP44Q9C0F1 390 aa17.5■□□□□ 0.39
CLN3-216ENST00000565316 SAMSN1Q9NSI8 373 aaKnown RBP17.5■□□□□ 0.39
CLN3-216ENST00000565316 PPARGC1AQ9UBK2 798 aaKnown RBP17.5■□□□□ 0.39
CLN3-216ENST00000565316 LOC400499M0QZD8 3231 aa17.5■□□□□ 0.39
CLN3-216ENST00000565316 SLC31A1O15431 190 aa17.49■□□□□ 0.39
CLN3-216ENST00000565316 JUPP14923 745 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms