RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 COL5A1P20908 1838 aaPredicted RBP11.93□□□□□ -0.5
USP3-220ENST00000561381 A0A0D9SEW6 157 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 MCF2LO15068 1137 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 SLC7A4O43246 635 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 SMAD6O43541 496 aaKnown RBP11.93□□□□□ -0.5
USP3-220ENST00000561381 CLDN11O75508 207 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 LDOC1O95751 146 aaPredicted RBP11.93□□□□□ -0.5
USP3-220ENST00000561381 RHOCP08134 193 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 SRCP12931 536 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 ZNF18P17022 549 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 RRM1P23921 792 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 CXCR3P49682 368 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 SULT1E1P49888 294 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 KCNMA1Q12791 1236 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 RAPGEF1Q13905 1077 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 TPD52L1Q16890 204 aaPredicted RBP11.93□□□□□ -0.5
USP3-220ENST00000561381 DPCR1Q3MIW9 517 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 VWA3BQ502W6 1294 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 SLC45A4Q5BKX6 768 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 TAF3Q5VWG9 929 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 FAM46CQ5VWP2 391 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 LINGO4Q6UY18 593 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 TFAP2DQ7Z6R9 452 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 DSG4Q86SJ6 1040 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 TRIM69Q86WT6 500 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 MFSD2AQ8NA29 543 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 CHST14Q8NCH0 376 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 KLK6Q92876 244 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 KCTD12Q96CX2 325 aaKnown RBP11.93□□□□□ -0.5
USP3-220ENST00000561381 PPP1R9BQ96SB3 815 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 TBCBQ99426 244 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 MYOCQ99972 504 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 KDM4CQ9H3R0 1056 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 NDST4Q9H3R1 872 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 DKK4Q9UBT3 224 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 VPS51Q9UID3 782 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 HS3ST2Q9Y278 367 aa11.93□□□□□ -0.5
USP3-220ENST00000561381 C1QTNF3-AMACRE9PGA6 284 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 ALOX15BO15296 676 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 SLC31A1O15431 190 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 SDC3O75056 442 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 PRKCSHP14314 528 aaPredicted RBP11.92□□□□□ -0.5
USP3-220ENST00000561381 CYP11B1P15538 503 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 PRLRP16471 622 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 GLDCP23378 1020 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 CDH5P33151 784 aaPredicted RBP11.92□□□□□ -0.5
USP3-220ENST00000561381 FLT3P36888 993 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 RXRGP48443 463 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 ARRB1P49407 418 aaPredicted RBP11.92□□□□□ -0.5
USP3-220ENST00000561381 ACADVLP49748 655 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 SNX16P57768 344 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 DEUP1Q05D60 604 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 BRMS1LQ5PSV4 323 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 FAM102AQ5T9C2 384 aaPredicted RBP11.92□□□□□ -0.5
USP3-220ENST00000561381 PIP5KL1Q5T9C9 394 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 SFMBT2Q5VUG0 894 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 KANSL1Q7Z3B3 1105 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 PDZD3Q86UT5 571 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 TMPRSS12Q86WS5 348 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 XYLT1Q86Y38 959 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 ZDHHC17Q8IUH5 632 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 ATP11CQ8NB49 1132 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 TMEM35BQ8NCS4 154 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 OR7D4Q8NG98 312 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 OR2A12Q8NGT7 310 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 TSC1Q92574 1164 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 NT5C3BQ969T7 300 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 ARRDC3Q96B67 414 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 PGAP3Q96FM1 320 aaPredicted RBP11.92□□□□□ -0.5
USP3-220ENST00000561381 TUBGCP2Q9BSJ2 902 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 PDCL3Q9H2J4 239 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 TNKS2Q9H2K2 1166 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 ERVMER34-1Q9H9K5 563 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 TPX2Q9ULW0 747 aaKnown RBP11.92□□□□□ -0.5
USP3-220ENST00000561381 PCDHGA1Q9Y5H4 931 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 LAMA5O15230 3695 aa11.92□□□□□ -0.5
USP3-220ENST00000561381 ATRXP46100 2492 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 DRGXA6NNA5 263 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 E9PAM4 449 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 GOLGA8SH3BPF8 625 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 KPNA3O00505 521 aaPredicted RBP11.91□□□□□ -0.5
USP3-220ENST00000561381 YKT6O15498 198 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 RNGTTO60942 597 aaKnown RBP11.91□□□□□ -0.5
USP3-220ENST00000561381 RFPL3O75679 317 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 ENDOD1O94919 500 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 CHRNA3P32297 505 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 GABRB2P47870 512 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 BPIFB4P59827 614 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 KRT83P78385 493 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 MTA1Q13330 715 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 STAT4Q14765 748 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 SLC25A52Q3SY17 297 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 RAB6CQ53S08 254 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 KLHDC7AQ5VTJ3 777 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 NOP9Q86U38 636 aaKnown RBP11.91□□□□□ -0.5
USP3-220ENST00000561381 IQCHQ86VS3 1027 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 DCAF4L2Q8NA75 395 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 TMEM145Q8NBT3 493 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 C18orf8Q96DM3 657 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 CRELD1Q96HD1 420 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms