RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 TTC17Q96AE7 1141 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 ACDQ96AP0 544 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 HDAC11Q96DB2 347 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 TSGA13Q96PP4 275 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 QKIQ96PU8 341 aaKnown RBP eCLIP9.81□□□□□ -0.846e-15■■■■□ 22.1
CUX1-216ENST00000558469 TMEM121Q9BTD3 319 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 BRD8Q9H0E9 1235 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 RBM12Q9NTZ6 932 aaKnown RBP9.81□□□□□ -0.84
CUX1-216ENST00000558469 SEPT10Q9P0V9 454 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 VPS51Q9UID3 782 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 MUTYHQ9UIF7 546 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 ZNF148Q9UQR1 794 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 ACTL7AQ9Y615 435 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 A0A0A0MRY4 1105 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 BCLAF3A2AJT9 711 aaKnown RBP9.8□□□□□ -0.84
CUX1-216ENST00000558469 ZSCAN5CA6NGD5 496 aaPredicted RBP9.8□□□□□ -0.84
CUX1-216ENST00000558469 CCDC188H7C350 402 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 KCNK1O00180 336 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 MATN3O15232 486 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 KCNN4O15554 427 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 TIMM44O43615 452 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 ZMPSTE24O75844 475 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 MT-CO1P00395 513 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 ATP5BP06576 529 aaKnown RBP9.8□□□□□ -0.84
CUX1-216ENST00000558469 CCNB1P14635 433 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 VAV1P15498 845 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 CD72P21854 359 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 RBL1P28749 1068 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 COILP38432 576 aaPredicted RBP9.8□□□□□ -0.84
CUX1-216ENST00000558469 TNFRSF4P43489 277 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 KCNJ1P48048 391 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 STK19P49842 368 aaPredicted RBP9.8□□□□□ -0.84
CUX1-216ENST00000558469 ARF5P84085 180 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 SULT2A1Q06520 285 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 C2orf54Q08AI8 447 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 GRSF1Q12849 480 aaKnown RBP eCLIP9.8□□□□□ -0.84
CUX1-216ENST00000558469 OASLQ15646 514 aaKnown RBP9.8□□□□□ -0.84
CUX1-216ENST00000558469 CYP1B1Q16678 543 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 TMEM196Q5HYL7 178 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 FAM182AQ5T1J6 154 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 HEATR6Q6AI08 1181 aaKnown RBP9.8□□□□□ -0.84
CUX1-216ENST00000558469 TIGD7Q6NT04 549 aaPredicted RBP9.8□□□□□ -0.84
CUX1-216ENST00000558469 RETSATQ6NUM9 610 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 TTC27Q6P3X3 843 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 DRICH1Q6PGQ1 229 aaPredicted RBP9.8□□□□□ -0.84
CUX1-216ENST00000558469 CCDC137Q6PK04 289 aaKnown RBP9.8□□□□□ -0.84
CUX1-216ENST00000558469 GSTA5Q7RTV2 222 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 ZNF572Q7Z3I7 529 aaPredicted RBP9.8□□□□□ -0.84
CUX1-216ENST00000558469 SUGP1Q8IWZ8 645 aaKnown RBP9.8□□□□□ -0.84
CUX1-216ENST00000558469 CCDC105Q8IYK2 499 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 FAM71DQ8N9W8 422 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 C12orf50Q8NA57 414 aaPredicted RBP9.8□□□□□ -0.84
CUX1-216ENST00000558469 MNS1Q8NEH6 495 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 SPATA4Q8NEY3 305 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 USP33Q8TEY7 942 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 CYB5D2Q8WUJ1 264 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 NSMCE1Q8WV22 266 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 HTR3CQ8WXA8 447 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 FAM3CQ92520 227 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 NKD2Q969F2 451 aaPredicted RBP9.8□□□□□ -0.84
CUX1-216ENST00000558469 MSANTD3Q96H12 275 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 RPL10LQ96L21 214 aaKnown RBP9.8□□□□□ -0.84
CUX1-216ENST00000558469 CCDC114Q96M63 670 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 FERMT1Q9BQL6 677 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 DDX47Q9H0S4 455 aaKnown RBP9.8□□□□□ -0.84
CUX1-216ENST00000558469 PDFQ9HBH1 243 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 ELOVL2Q9NXB9 296 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 UBA2Q9UBT2 640 aaPredicted RBP9.8□□□□□ -0.84
CUX1-216ENST00000558469 WNT16Q9UBV4 365 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 SLC25A13Q9UJS0 675 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 PLA2G4CQ9UP65 541 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 ERVW-1Q9UQF0 538 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 DRG1Q9Y295 367 aaKnown RBP9.8□□□□□ -0.84
CUX1-216ENST00000558469 F5P12259 2224 aa9.8□□□□□ -0.84
CUX1-216ENST00000558469 CKAP5Q14008 2032 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 KRBA1A5PL33 1030 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 SHISA7A6NL88 538 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 K7EQS6 105 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 SGK1O00141 431 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 MAN2B1O00754 1011 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 SMAD6O43541 496 aaKnown RBP9.79□□□□□ -0.84
CUX1-216ENST00000558469 NEBLO76041 1014 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 CD160O95971 181 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 EGFP01133 1207 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 JCHAINP01591 159 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 ASLP04424 464 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 ITGAVP06756 1048 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 DLDP09622 509 aaKnown RBP9.79□□□□□ -0.84
CUX1-216ENST00000558469 DRD1P21728 446 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 CHRNA3P32297 505 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 SEC13P55735 322 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 GEMIN4P57678 1058 aaKnown RBP9.79□□□□□ -0.84
CUX1-216ENST00000558469 LMNB2Q03252 620 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 PRKCQQ04759 706 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 ZNF33AQ06730 810 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 SLC10A7Q0GE19 358 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 LBRQ14739 615 aaKnown RBP9.79□□□□□ -0.84
CUX1-216ENST00000558469 EIF4HQ15056 248 aaKnown RBP9.79□□□□□ -0.84
CUX1-216ENST00000558469 ACCSLQ4AC99 568 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 EMC10Q5UCC4 262 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms