RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 TTC3P53804 2025 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 CASTOR2A6NHX0 329 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 RRN3P2A6NIE6 340 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 TRIM13O60858 407 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 GRIA4P48058 902 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 MFSD10Q14728 455 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 XKR4Q5GH76 650 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 LDLRAD1Q5T700 205 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 FAM35AQ86V20 835 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 SLC41A1Q8IVJ1 513 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 HASPINQ8TF76 798 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 FERMT1Q9BQL6 677 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 ACE2Q9BYF1 805 aaPredicted RBP13.12□□□□□ -0.31
LDLR-207ENST00000558013 SORCS3Q9UPU3 1222 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 SMIM35A0A1B0GVV1 85 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 MAGEA13PA6NCF6 341 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 DFFAO00273 331 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 GABRDO14764 452 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 AHSGP02765 367 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 EPHX2P34913 555 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 PNPLA4P41247 253 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 NUDT2P50583 147 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 PKNOX1P55347 436 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 POLE2P56282 527 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 CCL14Q16627 93 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 LSM12Q3MHD2 195 aaKnown RBP13.12□□□□□ -0.31
LDLR-207ENST00000558013 CCDC153Q494R4 210 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 C9orf131Q5VYM1 1079 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 BHLHA9Q7RTU4 235 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 SNX32Q86XE0 403 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 CEP97Q8IW35 865 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 GDPD5Q8WTR4 605 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 USP13Q92995 863 aaPredicted RBP13.12□□□□□ -0.31
LDLR-207ENST00000558013 CMTM5Q96DZ9 223 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 GBA3Q9H227 469 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 TSPYL2Q9H2G4 693 aaPredicted RBP13.12□□□□□ -0.31
LDLR-207ENST00000558013 WDCPQ9H6R7 721 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 SUDS3Q9H7L9 328 aaPredicted RBP13.12□□□□□ -0.31
LDLR-207ENST00000558013 TCF7L2Q9NQB0 619 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 NDFIP2Q9NV92 336 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 PCDHGB4Q9UN71 923 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 PCDHGB5Q9Y5G0 923 aa13.12□□□□□ -0.31
LDLR-207ENST00000558013 AURKAO14965 403 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 PIGNO95427 931 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 USP10Q14694 798 aaKnown RBP13.11□□□□□ -0.31
LDLR-207ENST00000558013 TRIP10Q15642 601 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 NOMO2Q5JPE7 1267 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 SCAMP5Q8TAC9 235 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 KCTD13Q8WZ19 329 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 SCYL1Q96KG9 808 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 GPAMQ9HCL2 828 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 OXSMQ9NWU1 459 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 NEMP2A6NFY4 417 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 H3BNX3 289 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 CFLARO15519 480 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 STRNO43815 780 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 VAPBO95292 243 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 MYL3P08590 195 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 ADAM17P78536 824 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 GRB14Q14449 540 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 TLK2Q86UE8 772 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 FBXW8Q8N3Y1 598 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 TOP6BLQ8N6T0 577 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 SNX31Q8N9S9 440 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 RNF34Q969K3 372 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 CATSPER2Q96P56 530 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 PPP1R10Q96QC0 940 aaKnown RBP13.11□□□□□ -0.31
LDLR-207ENST00000558013 PTPN18Q99952 460 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 C1QTNF1Q9BXJ1 281 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 RUVBL2Q9Y230 463 aaKnown RBP13.11□□□□□ -0.31
LDLR-207ENST00000558013 FIS1Q9Y3D6 152 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 SLC35E2BP0CK96 405 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 TFEBP19484 476 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 BTKQ06187 659 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 PDCD2Q16342 344 aaPredicted RBP13.11□□□□□ -0.31
LDLR-207ENST00000558013 NXNQ6DKJ4 435 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 ESRP1Q6NXG1 681 aaKnown RBP13.11□□□□□ -0.31
LDLR-207ENST00000558013 ZC3HC1Q86WB0 502 aaKnown RBP13.11□□□□□ -0.31
LDLR-207ENST00000558013 CENPLQ8N0S6 344 aaPredicted RBP13.11□□□□□ -0.31
LDLR-207ENST00000558013 FAM156AQ8NDB6 213 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 IPMKQ8NFU5 416 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 ISL2Q96A47 359 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 TEKT5Q96M29 485 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 SIKE1Q9BRV8 207 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 MCMBPQ9BTE3 642 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 PAPOLBQ9NRJ5 636 aaKnown RBP13.11□□□□□ -0.31
LDLR-207ENST00000558013 CDY2AQ9Y6F7 541 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 CDY1Q9Y6F8 540 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 AK5Q9Y6K8 562 aa13.11□□□□□ -0.31
LDLR-207ENST00000558013 SF3B1O75533 1304 aaKnown RBP eCLIP13.1□□□□□ -0.319e-6■■■■■ 68.9
LDLR-207ENST00000558013 CAPN8A6NHC0 703 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 GRID2O43424 1007 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 FKBP6O75344 327 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 CTSHP09668 335 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 CHRNA4P43681 627 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 NAB1Q13506 487 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 ZRSR2Q15696 482 aaKnown RBP13.1□□□□□ -0.31
LDLR-207ENST00000558013 IQSEC1Q6DN90 963 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 TAC4Q86UU9 113 aa13.1□□□□□ -0.31
LDLR-207ENST00000558013 PDSS2Q86YH6 399 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms