RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 SERINC3Q13530 473 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 DLG2Q15700 870 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 IFI16Q16666 785 aaKnown RBP17.86■□□□□ 0.45
SHMT2-225ENST00000556798 ODF2Q5BJF6 829 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 AFMIDQ63HM1 303 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 NCBP2-AS2Q69YL0 99 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 RETSATQ6NUM9 610 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 ARHGAP36Q6ZRI8 547 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 Q6ZVU0 165 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 LONP2Q86WA8 852 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 FRS2Q8WU20 508 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 PTPRN2Q92932 1015 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 FAF2Q96CS3 445 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 MKRN2Q9H000 416 aaKnown RBP17.86■□□□□ 0.45
SHMT2-225ENST00000556798 ZSCAN32Q9NX65 697 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 DDX56Q9NY93 547 aaKnown RBP17.86■□□□□ 0.45
SHMT2-225ENST00000556798 SUN2Q9UH99 717 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 PPP2R2CQ9Y2T4 447 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 FCF1Q9Y324 198 aaKnown RBP17.86■□□□□ 0.45
SHMT2-225ENST00000556798 THADAQ6YHU6 1953 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 EDDM13A0A1B0GTR0 161 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 ARHGAP42A6NI28 874 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 KRT86O43790 486 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 MFSD11O43934 449 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 BNIP3LO60238 219 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 FTCDO95954 541 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 CD160O95971 181 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 VASPP50552 380 aaPredicted RBP17.85■□□□□ 0.45
SHMT2-225ENST00000556798 NRLP54845 237 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 LLGL1Q15334 1064 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 C9orf64Q5T6V5 341 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 C22orf39Q6P5X5 142 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 MFSD7Q6UXD7 560 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 KIAA1324Q6UXG2 1013 aaKnown RBP17.85■□□□□ 0.45
SHMT2-225ENST00000556798 WDR5BQ86VZ2 330 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 PQLC3Q8N755 202 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 OR2T3Q8NH03 318 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 MRGPRX1Q96LB2 322 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 FAM126AQ9BYI3 521 aaPredicted RBP17.85■□□□□ 0.45
SHMT2-225ENST00000556798 TNKS2Q9H2K2 1166 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 CD93Q9NPY3 652 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 EBF1Q9UH73 591 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 INVSQ9Y283 1065 aa17.85■□□□□ 0.45
SHMT2-225ENST00000556798 VPS13AQ96RL7 3174 aa17.84■□□□□ 0.45
SHMT2-225ENST00000556798 J3KR12 359 aa17.84■□□□□ 0.45
SHMT2-225ENST00000556798 ZBTB24O43167 697 aaPredicted RBP17.84■□□□□ 0.45
SHMT2-225ENST00000556798 MAP3K6O95382 1288 aa17.84■□□□□ 0.45
SHMT2-225ENST00000556798 CTNNA1P35221 906 aaKnown RBP17.84■□□□□ 0.45
SHMT2-225ENST00000556798 SERPINB6P35237 376 aa17.84■□□□□ 0.45
SHMT2-225ENST00000556798 PEX26Q7Z412 305 aa17.84■□□□□ 0.45
SHMT2-225ENST00000556798 NT5DC3Q86UY8 548 aa17.84■□□□□ 0.45
SHMT2-225ENST00000556798 TMPRSS6Q8IU80 811 aa17.84■□□□□ 0.45
SHMT2-225ENST00000556798 KATNAL2Q8IYT4 538 aa17.84■□□□□ 0.45
SHMT2-225ENST00000556798 STK40Q8N2I9 435 aa17.84■□□□□ 0.45
SHMT2-225ENST00000556798 LZTR1Q8N653 840 aa17.84■□□□□ 0.45
SHMT2-225ENST00000556798 ZBTB44Q8NCP5 570 aa17.84■□□□□ 0.45
SHMT2-225ENST00000556798 RNF157Q96PX1 679 aa17.84■□□□□ 0.45
SHMT2-225ENST00000556798 PRDM16Q9HAZ2 1276 aa17.84■□□□□ 0.45
SHMT2-225ENST00000556798 PACSIN2Q9UNF0 486 aaPredicted RBP17.84■□□□□ 0.45
SHMT2-225ENST00000556798 PCDHGA2Q9Y5H1 932 aa17.84■□□□□ 0.45
SHMT2-225ENST00000556798 NUMA1Q14980 2115 aa17.84■□□□□ 0.45
SHMT2-225ENST00000556798 ABCA7Q8IZY2 2146 aa17.84■□□□□ 0.45
SHMT2-225ENST00000556798 TARSL2A2RTX5 802 aaKnown RBP17.83■□□□□ 0.44
SHMT2-225ENST00000556798 CTNNA2P26232 953 aa17.83■□□□□ 0.44
SHMT2-225ENST00000556798 CLCN6P51797 869 aa17.83■□□□□ 0.44
SHMT2-225ENST00000556798 CCDC173Q0VFZ6 552 aa17.83■□□□□ 0.44
SHMT2-225ENST00000556798 RFX6Q8HWS3 928 aa17.83■□□□□ 0.44
SHMT2-225ENST00000556798 CCDC50Q8IVM0 306 aa17.83■□□□□ 0.44
SHMT2-225ENST00000556798 SYCE1Q8N0S2 351 aa17.83■□□□□ 0.44
SHMT2-225ENST00000556798 RNF10Q8N5U6 811 aaKnown RBP17.83■□□□□ 0.44
SHMT2-225ENST00000556798 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.83■□□□□ 0.44
SHMT2-225ENST00000556798 RLN3Q8WXF3 142 aa17.83■□□□□ 0.44
SHMT2-225ENST00000556798 SP110Q9HB58 689 aa17.83■□□□□ 0.44
SHMT2-225ENST00000556798 PDFQ9HBH1 243 aa17.83■□□□□ 0.44
SHMT2-225ENST00000556798 AMFRQ9UKV5 643 aa17.83■□□□□ 0.44
SHMT2-225ENST00000556798 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.83■□□□□ 0.44
SHMT2-225ENST00000556798 CCDC163A0A0D9SF12 145 aa17.82■□□□□ 0.44
SHMT2-225ENST00000556798 ZSCAN5CA6NGD5 496 aaPredicted RBP17.82■□□□□ 0.44
SHMT2-225ENST00000556798 PRAMEF11O60813 436 aa17.82■□□□□ 0.44
SHMT2-225ENST00000556798 ZNF821O75541 412 aaPredicted RBP17.82■□□□□ 0.44
SHMT2-225ENST00000556798 TMCC1O94876 653 aa17.82■□□□□ 0.44
SHMT2-225ENST00000556798 KRT10P13645 584 aa17.82■□□□□ 0.44
SHMT2-225ENST00000556798 CDKN2BP42772 138 aa17.82■□□□□ 0.44
SHMT2-225ENST00000556798 PSMD8P48556 350 aa17.82■□□□□ 0.44
SHMT2-225ENST00000556798 DNA2P51530 1060 aa17.82■□□□□ 0.44
SHMT2-225ENST00000556798 GEMIN4P57678 1058 aaKnown RBP17.82■□□□□ 0.44
SHMT2-225ENST00000556798 RPS14P62263 151 aaKnown RBP17.82■□□□□ 0.44
SHMT2-225ENST00000556798 DYNLT1P63172 113 aa17.82■□□□□ 0.44
SHMT2-225ENST00000556798 GBE1Q04446 702 aa17.82■□□□□ 0.44
SHMT2-225ENST00000556798 SLC20A2Q08357 652 aa17.82■□□□□ 0.44
SHMT2-225ENST00000556798 PAFAH1B3Q15102 231 aaKnown RBP17.82■□□□□ 0.44
SHMT2-225ENST00000556798 ZC3H14Q6PJT7 736 aaKnown RBP17.82■□□□□ 0.44
SHMT2-225ENST00000556798 SPOCD1Q6ZMY3 1216 aa17.82■□□□□ 0.44
SHMT2-225ENST00000556798 ZNF662Q6ZS27 426 aa17.82■□□□□ 0.44
SHMT2-225ENST00000556798 MMAAQ8IVH4 418 aaKnown RBP17.82■□□□□ 0.44
SHMT2-225ENST00000556798 ATPAF2Q8N5M1 289 aa17.82■□□□□ 0.44
SHMT2-225ENST00000556798 FAM160A2Q8N612 972 aaPredicted RBP17.82■□□□□ 0.44
SHMT2-225ENST00000556798 PLD5Q8N7P1 536 aa17.82■□□□□ 0.44
SHMT2-225ENST00000556798 FRMD1Q8N878 549 aa17.82■□□□□ 0.44
SHMT2-225ENST00000556798 PRCCQ92733 491 aaPredicted RBP17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms