RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	RBMS1	P29558	406 aa	Known RBP	12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	CHRNA3	P32297	505 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	CLDN2	P57739	230 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	HNRNPK	P61978	463 aa	Known RBP eCLIP	12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	KRT83	P78385	493 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	MTA1	Q13330	715 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	LY6D	Q14210	128 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	TAF5	Q15542	800 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	ISX	Q2M1V0	245 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	ZNF542P	Q5EBM4	170 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689		Q6ZSR6	202 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	ABI3BP	Q7Z7G0	1075 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	ARHGEF19	Q8IW93	802 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	ATP11C	Q8NB49	1132 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	EHBP1	Q8NDI1	1231 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	TMIE	Q8NEW7	156 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	MAPK15	Q8TD08	544 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	SNRNP27	Q8WVK2	155 aa	Known RBP	12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	TTC9	Q92623	222 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	GRAMD1A	Q96CP6	724 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	VCPIP1	Q96JH7	1222 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	CEP63	Q96MT8	703 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	GTPBP4	Q9BZE4	634 aa	Known RBP	12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	SEMA4C	Q9C0C4	833 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	FAM204A	Q9H8W3	233 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	ASCL3	Q9NQ33	180 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	COX16	Q9P0S2	106 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	VANGL2	Q9ULK5	521 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	CNTN6	Q9UQ52	1028 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	HS3ST3A1	Q9Y663	406 aa		12.98	□□□□□ -0.33
SHMT2-223	ENST00000556689	LY6G6E	A0A0G2JKS1	128 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	CLDN11	O75508	207 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	LETM1	O95202	739 aa	Predicted RBP	12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	SMC2	O95347	1197 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	MT-CO1	P00395	513 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	CTSL	P07711	333 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	GLI1	P08151	1106 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	SRC	P12931	536 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	CENPC	Q03188	943 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	KCNC4	Q03721	635 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	MEA1	Q16626	185 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	CCDC40	Q4G0X9	1142 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	IGF2-AS	Q6U949	168 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	DEFB106A	Q8N104	65 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	SLC22A18AS	Q8N1D0	253 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	OR2A12	Q8NGT7	310 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	IFI44	Q8TCB0	444 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	ZNF606	Q8WXB4	792 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	ARRDC3	Q96B67	414 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	CCDC97	Q96F63	343 aa	Predicted RBP	12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	BMF	Q96LC9	184 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	KREMEN1	Q96MU8	473 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	SLC46A1	Q96NT5	459 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	NOX5	Q96PH1	765 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	MUC3B	Q9H195	1237 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	CLMP	Q9H6B4	373 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	CAAP1	Q9H8G2	361 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	DNAJC28	Q9NX36	388 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	NCKIPSD	Q9NZQ3	722 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	ZFR2	Q9UPR6	939 aa	Known RBP	12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	SATB2	Q9UPW6	733 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	HS3ST2	Q9Y278	367 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	TBC1D30	Q9Y2I9	924 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	SSUH2	Q9Y2M2	353 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	ZDHHC9	Q9Y397	364 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689		U3KQA8	63 aa		12.97	□□□□□ -0.33
SHMT2-223	ENST00000556689	TP53BP1	Q12888	1972 aa	Predicted RBP	12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689		A6NNZ2	444 aa		12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	PSMA7	O14818	248 aa		12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	NEBL	O76041	1014 aa		12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	PRNP	P04156	253 aa		12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	TGM2	P21980	687 aa		12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	CDH4	P55283	916 aa		12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	STIM1	Q13586	685 aa		12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	ARSI	Q5FYB1	569 aa		12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	EFHC1	Q5JVL4	640 aa		12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	SEL1L3	Q68CR1	1132 aa		12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	ZCCHC8	Q6NZY4	707 aa	Known RBP	12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	GCNT7	Q6ZNI0	430 aa		12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	ERN2	Q76MJ5	926 aa	Known RBP	12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	TPCN2	Q8NHX9	752 aa		12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	MED8	Q96G25	268 aa		12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	DHTKD1	Q96HY7	919 aa	Predicted RBP	12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	SLC2A13	Q96QE2	648 aa		12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	C2orf49	Q9BVC5	232 aa	Predicted RBP	12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	HDAC8	Q9BY41	377 aa		12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	SLC17A9	Q9BYT1	436 aa		12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	UBE2T	Q9NPD8	197 aa	Predicted RBP	12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	ATP6V1D	Q9Y5K8	247 aa		12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	HS3ST4	Q9Y661	456 aa		12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	CSNK1G3	Q9Y6M4	447 aa		12.96	□□□□□ -0.33
SHMT2-223	ENST00000556689	ZNF462	Q96JM2	2506 aa		12.96	□□□□□ -0.34
SHMT2-223	ENST00000556689	CPED1	A4D0V7	1026 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689		H3BM21	787 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689		K7ENP7	123 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689		K7ERQ8	282 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	RIOK3	O14730	519 aa	Known RBP	12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	THAP12	O43422	761 aa		12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	LZTS3	O60299	673 aa	Predicted RBP	12.95	□□□□□ -0.34
SHMT2-223	ENST00000556689	PAK4	O96013	591 aa	Predicted RBP	12.95	□□□□□ -0.34

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms