RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 CIR1Q86X95 450 aaPredicted RBP15.1■□□□□ 0.01
CUX1-215ENST00000556210 NT5DC4Q86YG4 428 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 ZNF781Q8N8C0 355 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 FBXO32Q969P5 355 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 LRRC39Q96DD0 335 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 FCRL2Q96LA5 508 aaPredicted RBP15.1■□□□□ 0.01
CUX1-215ENST00000556210 SEMA6AQ9H2E6 1030 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 CATSPERBQ9H7T0 1116 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 TRPC7Q9HCX4 862 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 XPR1Q9UBH6 696 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 CNTN6Q9UQ52 1028 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 RNF103-CHMP3A0A140T963 221 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 BHMG1C9JSJ3 638 aaPredicted RBP15.1■□□□□ 0.01
CUX1-215ENST00000556210 CNMDO75829 334 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 F9P00740 461 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 ANKRD20A4Q4UJ75 823 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 AGKQ53H12 422 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 SGO1Q5FBB7 561 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 CFAP52Q8N1V2 620 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 BBS5Q8N3I7 341 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 GALNT15Q8N3T1 639 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 DCBLD1Q8N8Z6 715 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 FBXO27Q8NI29 283 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 DENND1AQ8TEH3 1009 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 EME1Q96AY2 570 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 ZNF778Q96MU6 729 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 SLC4A5Q9BY07 1137 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 COG4Q9H9E3 785 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 ANGPTL3Q9Y5C1 460 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 RAG1P15918 1043 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 NELFEP18615 380 aaKnown RBP15.1■□□□□ 0.01
CUX1-215ENST00000556210 HOXA11P31270 313 aaPredicted RBP15.1■□□□□ 0.01
CUX1-215ENST00000556210 PDAP1Q13442 181 aaKnown RBP15.1■□□□□ 0.01
CUX1-215ENST00000556210 ARMC3Q5W041 872 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 C4orf22Q6V702 233 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 OR52K2Q8NGK3 314 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 SIGLEC10Q96LC7 697 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 TRAPPC9Q96Q05 1148 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 FTHL17Q9BXU8 183 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 APPL1Q9UKG1 709 aa15.1■□□□□ 0.01
CUX1-215ENST00000556210 SOCS7O14512 581 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 TBX18O95935 607 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 RGS2P41220 211 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 CD86P42081 329 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 ATN1P54259 1190 aaPredicted RBP15.09■□□□□ 0.01
CUX1-215ENST00000556210 GRM3Q14832 879 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 ZNF280DQ6N043 979 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 ESRP1Q6NXG1 681 aaKnown RBP15.09■□□□□ 0.01
CUX1-215ENST00000556210 CLEC20AQ6ZU45 233 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 TREML1Q86YW5 311 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 DMAP1Q9NPF5 467 aaPredicted RBP15.09■□□□□ 0.01
CUX1-215ENST00000556210 CLIC5Q9NZA1 410 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 HACD3Q9P035 362 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 IGKV6-21A0A0C4DH24 114 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 E5RI56 91 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 PGM3O95394 542 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 LYNP07948 512 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 T-ENOLP0DO92 83 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 ELNP15502 786 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 ITGB6P18564 788 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 GRK2P25098 689 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 KYAT3Q6YP21 454 aaKnown RBP15.09■□□□□ 0.01
CUX1-215ENST00000556210 CYP2S1Q96SQ9 504 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 ECSITQ9BQ95 431 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 COL5A3P25940 1745 aaPredicted RBP15.09■□□□□ 0.01
CUX1-215ENST00000556210 FAM95CA0A1B0GW59 222 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 FKBP6O75344 327 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 GNAZP19086 355 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 GRK4P32298 578 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 CDH5P33151 784 aaPredicted RBP15.09■□□□□ 0.01
CUX1-215ENST00000556210 GJA5P36382 358 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 KPNA2P52292 529 aaKnown RBP15.09■□□□□ 0.01
CUX1-215ENST00000556210 UGP2Q16851 508 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 CTXN3Q4LDR2 81 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 FAM171A1Q5VUB5 890 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 RAP1GAP2Q684P5 730 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 DTNBP1Q96EV8 351 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 CPNE1Q99829 537 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 GORASP1Q9BQQ3 440 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 MRPL1Q9BYD6 325 aaKnown RBP15.09■□□□□ 0.01
CUX1-215ENST00000556210 FAM192AQ9GZU8 254 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 DSEQ9UL01 958 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 NRAPQ86VF7 1730 aa15.09■□□□□ 0.01
CUX1-215ENST00000556210 GPR182O15218 404 aa15.08■□□□□ 0.01
CUX1-215ENST00000556210 ANXA9O76027 345 aa15.08■□□□□ 0.01
CUX1-215ENST00000556210 MAP2K5Q13163 448 aa15.08■□□□□ 0.01
CUX1-215ENST00000556210 QKIQ96PU8 341 aaKnown RBP eCLIP15.08■□□□□ 0.016e-15■■■■□ 22.1
CUX1-215ENST00000556210 DTNAQ9Y4J8 743 aa15.08■□□□□ 0.01
CUX1-215ENST00000556210 SUPT3HB4E1H0 165 aa15.08■□□□□ 0
CUX1-215ENST00000556210 PLIN3O60664 434 aa15.08■□□□□ 0
CUX1-215ENST00000556210 SUPT3HO75486 399 aa15.08■□□□□ 0
CUX1-215ENST00000556210 PTPN3P26045 913 aa15.08■□□□□ 0
CUX1-215ENST00000556210 NEK3P51956 506 aa15.08■□□□□ 0
CUX1-215ENST00000556210 GHRHRQ02643 423 aa15.08■□□□□ 0
CUX1-215ENST00000556210 GRTP1Q5TC63 336 aa15.08■□□□□ 0
CUX1-215ENST00000556210 MARC1Q5VT66 337 aa15.08■□□□□ 0
CUX1-215ENST00000556210 PLD6Q8N2A8 252 aaKnown RBP15.08■□□□□ 0
CUX1-215ENST00000556210 GDPD5Q8WTR4 605 aa15.08■□□□□ 0
CUX1-215ENST00000556210 MIPEPQ99797 713 aa15.08■□□□□ 0
CUX1-215ENST00000556210 OXCT2Q9BYC2 517 aaPredicted RBP15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms