RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 HTR7P34969 479 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 PRKCIP41743 596 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 CTSKP43235 329 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 CSNK1EP49674 416 aaKnown RBP12.11□□□□□ -0.47
VRK1-204ENST00000555351 GNA12Q03113 381 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 OVGP1Q12889 678 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 CDO1Q16878 200 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 C15orf59Q2T9L4 293 aaPredicted RBP12.11□□□□□ -0.47
VRK1-204ENST00000555351 DNAJC24Q6P3W2 148 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 Q6ZVU0 165 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 TFAP2DQ7Z6R9 452 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 IQCHQ86VS3 1027 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 NLRP14Q86W24 1093 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 TRIM69Q86WT6 500 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 MCOLN2Q8IZK6 566 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 PCDH20Q8N6Y1 951 aaKnown RBP12.11□□□□□ -0.47
VRK1-204ENST00000555351 OR2A12Q8NGT7 310 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 OR14C36Q8NHC7 312 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 PIP4K2CQ8TBX8 421 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 CNTNAP3BQ96NU0 1288 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 EIF3CQ99613 913 aaKnown RBP12.11□□□□□ -0.47
VRK1-204ENST00000555351 CNTNAP3Q9BZ76 1288 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 MAGEH1Q9H213 219 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 TMPRSS4Q9NRS4 437 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 TM7SF3Q9NS93 570 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 DONSONQ9NYP3 566 aa12.11□□□□□ -0.47
VRK1-204ENST00000555351 CHD5Q8TDI0 1954 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 FAM221BA6H8Z2 402 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 ZSCAN5CA6NGD5 496 aaPredicted RBP12.1□□□□□ -0.47
VRK1-204ENST00000555351 YKT6O15498 198 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 SH3BP5O60239 455 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 SNAP91O60641 907 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 RNGTTO60942 597 aaKnown RBP12.1□□□□□ -0.47
VRK1-204ENST00000555351 CBFA2T3O75081 653 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 MT-CO1P00395 513 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 PLEKP08567 350 aaPredicted RBP12.1□□□□□ -0.47
VRK1-204ENST00000555351 TNFAIP3P21580 790 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 CHRNA3P32297 505 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 RECQLP46063 649 aaPredicted RBP12.1□□□□□ -0.47
VRK1-204ENST00000555351 SERPINH1P50454 418 aaKnown RBP12.1□□□□□ -0.47
VRK1-204ENST00000555351 TPM4P67936 248 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 SIM1P81133 766 aaPredicted RBP12.1□□□□□ -0.47
VRK1-204ENST00000555351 NR1I3Q14994 352 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 IQCB1Q15051 598 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 KIF19Q2TAC6 998 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 SLC45A4Q5BKX6 768 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 EFHC2Q5JST6 749 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 AGBL4Q5VU57 503 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 C22orf39Q6P5X5 142 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.1□□□□□ -0.47
VRK1-204ENST00000555351 ADAT2Q7Z6V5 191 aaKnown RBP12.1□□□□□ -0.47
VRK1-204ENST00000555351 SLFN11Q7Z7L1 901 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 PRPF39Q86UA1 669 aaKnown RBP12.1□□□□□ -0.47
VRK1-204ENST00000555351 ZSCAN30Q86W11 494 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 OR2I1PQ8NGU4 316 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 TBC1D31Q96DN5 1066 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 IQCDQ96DY2 449 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 PPP1R16AQ96I34 528 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 LRIG1Q96JA1 1093 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 CDC6Q99741 560 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 NCAPGQ9BPX3 1015 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 HDAC8Q9BY41 377 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 ERVMER34-1Q9H9K5 563 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 ATP13A1Q9HD20 1204 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 SEPT11Q9NVA2 429 aaKnown RBP12.1□□□□□ -0.47
VRK1-204ENST00000555351 PARVAQ9NVD7 372 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 PCOLCE2Q9UKZ9 415 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 SARDHQ9UL12 918 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 NEU3Q9UQ49 428 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 PCDHB9Q9Y5E1 797 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 SNX11Q9Y5W9 270 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 SNX10Q9Y5X0 201 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 NUMA1Q14980 2115 aa12.1□□□□□ -0.47
VRK1-204ENST00000555351 PLXNA2O75051 1894 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 TBC1D3DA0A087WVF3 549 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 TBC1D3IA0A087WXS9 549 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 TBC1D3EA0A087X179 549 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 TBC1D3KA0A087X1G2 549 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 TBC1D3FA6NER0 549 aaPredicted RBP12.09□□□□□ -0.47
VRK1-204ENST00000555351 FAM47DPA6NHR8 397 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 WASH4PA8MWX3 477 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 TBC1D3LB9A6J9 549 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 CBX4O00257 560 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 SMAD6O43541 496 aaKnown RBP12.09□□□□□ -0.47
VRK1-204ENST00000555351 MAGEC1O60732 1142 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 LRIG2O94898 1065 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 TBC1D3HP0C7X1 549 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 RRM1P23921 792 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 CD38P28907 300 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 CCT8P50990 548 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 C21orf59P57076 290 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 YBEYP58557 167 aaPredicted RBP12.09□□□□□ -0.47
VRK1-204ENST00000555351 CNTN1Q12860 1018 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 TRIP6Q15654 476 aaKnown RBP12.09□□□□□ -0.47
VRK1-204ENST00000555351 INAVAQ3KP66 663 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 SETMARQ53H47 684 aaPredicted RBP12.09□□□□□ -0.47
VRK1-204ENST00000555351 PIP5KL1Q5T9C9 394 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 TBC1D3GQ6DHY5 549 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 TBC1D3CQ6IPX1 549 aa12.09□□□□□ -0.47
VRK1-204ENST00000555351 NAPEPLDQ6IQ20 393 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms