RNA–Protein interactions for RNA: ENST00000553989.1

TDP1-208, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-208ENST00000553989 E5RJQ4 531 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 C1QTNF3-AMACRE9PGA6 284 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 WNT9AO14904 365 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 P4HA2O15460 535 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 THAP12O43422 761 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 MAGEC1O60732 1142 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 SDC3O75056 442 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 RTN2O75298 545 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 TRUB2O95900 331 aaKnown RBP9.09□□□□□ -0.95
TDP1-208ENST00000553989 FYNP06241 537 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 C1SP09871 688 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 VAV1P15498 845 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 USP8P40818 1118 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 PPP1R2P41236 205 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 ACADVLP49748 655 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 NXPH1P58417 271 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 GCNT1Q02742 428 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 TARDBPQ13148 414 aaKnown RBP eCLIP9.09□□□□□ -0.95
TDP1-208ENST00000553989 SLC12A1Q13621 1099 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 TRIM14Q14142 442 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 KCNJ12Q14500 433 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 STAT4Q14765 748 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 FAM46CQ5VWP2 391 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 SYPL2Q5VXT5 272 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 NAPEPLDQ6IQ20 393 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 DENND1BQ6P3S1 775 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 TRIM65Q6PJ69 517 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 TMTC1Q8IUR5 882 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 REXO1L1PQ8IX06 675 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 BAP1Q92560 729 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 PTPRN2Q92932 1015 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 SLC39A13Q96H72 371 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 DHTKD1Q96HY7 919 aaPredicted RBP9.09□□□□□ -0.95
TDP1-208ENST00000553989 RPRD1AQ96P16 312 aaPredicted RBP9.09□□□□□ -0.95
TDP1-208ENST00000553989 BBC3Q96PG8 261 aaPredicted RBP9.09□□□□□ -0.95
TDP1-208ENST00000553989 SPAG5Q96R06 1193 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 MED15Q96RN5 788 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 FAM129BQ96TA1 746 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 FAM53CQ9NYF3 392 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 DNAI1Q9UI46 699 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 CTNND2Q9UQB3 1225 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 PPP2R2CQ9Y2T4 447 aa9.09□□□□□ -0.95
TDP1-208ENST00000553989 TP53BP1Q12888 1972 aaPredicted RBP9.08□□□□□ -0.96
TDP1-208ENST00000553989 A0A1B0GVM2 712 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 BICDL2A1A5D9 508 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 TCAF2A6NFQ2 919 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 KCNU1A8MYU2 1149 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 CCDC175P0C221 793 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 SLC2A3P11169 496 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 BMP6P22004 513 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 ITPKBP27987 946 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 GNA15P30679 374 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 GPD2P43304 727 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 METAP1P53582 386 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 OXCT1P55809 520 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 YWHAZP63104 245 aaKnown RBP9.08□□□□□ -0.96
TDP1-208ENST00000553989 DAB2P98082 770 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 CDK17Q00537 523 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 CENPCQ03188 943 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 BNIP3Q12983 259 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 SHBQ15464 509 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 SETMARQ53H47 684 aaPredicted RBP9.08□□□□□ -0.96
TDP1-208ENST00000553989 TTC39BQ5VTQ0 682 aaPredicted RBP9.08□□□□□ -0.96
TDP1-208ENST00000553989 TAF3Q5VWG9 929 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 CNGA4Q8IV77 575 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 MFSD2AQ8NA29 543 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 NELFBQ8WX92 580 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 UBL7Q96S82 380 aaPredicted RBP9.08□□□□□ -0.96
TDP1-208ENST00000553989 MYOCQ99972 504 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 INTS2Q9H0H0 1204 aaKnown RBP9.08□□□□□ -0.96
TDP1-208ENST00000553989 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.08□□□□□ -0.96
TDP1-208ENST00000553989 DDIT4Q9NX09 232 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 VPS28Q9UK41 221 aa9.08□□□□□ -0.96
TDP1-208ENST00000553989 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.08□□□□□ -0.96
TDP1-208ENST00000553989 COL5A1P20908 1838 aaPredicted RBP9.08□□□□□ -0.96
TDP1-208ENST00000553989 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.07□□□□□ -0.96
TDP1-208ENST00000553989 PMM2O15305 246 aa9.07□□□□□ -0.96
TDP1-208ENST00000553989 SLC7A4O43246 635 aa9.07□□□□□ -0.96
TDP1-208ENST00000553989 LATO43561 262 aa9.07□□□□□ -0.96
TDP1-208ENST00000553989 PLRG1O43660 514 aaKnown RBP9.07□□□□□ -0.96
TDP1-208ENST00000553989 GRAP2O75791 330 aa9.07□□□□□ -0.96
TDP1-208ENST00000553989 URI1O94763 535 aaPredicted RBP9.07□□□□□ -0.96
TDP1-208ENST00000553989 GNA14O95837 355 aa9.07□□□□□ -0.96
TDP1-208ENST00000553989 AFPP02771 609 aaKnown RBP9.07□□□□□ -0.96
TDP1-208ENST00000553989 H2AFXP16104 143 aaPredicted RBP9.07□□□□□ -0.96
TDP1-208ENST00000553989 CKMT2P17540 419 aa9.07□□□□□ -0.96
TDP1-208ENST00000553989 GLDCP23378 1020 aa9.07□□□□□ -0.96
TDP1-208ENST00000553989 CCR1P32246 355 aa9.07□□□□□ -0.96
TDP1-208ENST00000553989 DRD3P35462 400 aa9.07□□□□□ -0.96
TDP1-208ENST00000553989 NUDT1P36639 197 aa9.07□□□□□ -0.96
TDP1-208ENST00000553989 STX17P56962 302 aa9.07□□□□□ -0.96
TDP1-208ENST00000553989 PITX1P78337 314 aaPredicted RBP9.07□□□□□ -0.96
TDP1-208ENST00000553989 C19orf57Q0VDD7 668 aa9.07□□□□□ -0.96
TDP1-208ENST00000553989 KCNH2Q12809 1159 aa9.07□□□□□ -0.96
TDP1-208ENST00000553989 CNTN1Q12860 1018 aa9.07□□□□□ -0.96
TDP1-208ENST00000553989 NME3Q13232 169 aa9.07□□□□□ -0.96
TDP1-208ENST00000553989 ZNF177Q13360 481 aaPredicted RBP9.07□□□□□ -0.96
TDP1-208ENST00000553989 PDCLQ13371 301 aa9.07□□□□□ -0.96
TDP1-208ENST00000553989 ILKQ13418 452 aa9.07□□□□□ -0.96
TDP1-208ENST00000553989 TMCO3Q6UWJ1 677 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms