RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 RFX6Q8HWS3 928 aa5.41□□□□□ -1.54
SCFD1-209ENST00000553280 ULK2Q8IYT8 1036 aa5.41□□□□□ -1.54
SCFD1-209ENST00000553280 CPXM2Q8N436 756 aa5.41□□□□□ -1.54
SCFD1-209ENST00000553280 C11orf65Q8NCR3 313 aa5.41□□□□□ -1.54
SCFD1-209ENST00000553280 ACTRT2Q8TDY3 377 aa5.41□□□□□ -1.54
SCFD1-209ENST00000553280 HSPH1Q92598 858 aa5.41□□□□□ -1.54
SCFD1-209ENST00000553280 KLHL29Q96CT2 875 aa5.41□□□□□ -1.54
SCFD1-209ENST00000553280 FAM120BQ96EK7 910 aaKnown RBP5.41□□□□□ -1.54
SCFD1-209ENST00000553280 PDLIM2Q96JY6 352 aa5.41□□□□□ -1.54
SCFD1-209ENST00000553280 CADM1Q9BY67 442 aaKnown RBP5.41□□□□□ -1.54
SCFD1-209ENST00000553280 LIMA1Q9UHB6 759 aaKnown RBP5.41□□□□□ -1.54
SCFD1-209ENST00000553280 SLCO3A1Q9UIG8 710 aa5.41□□□□□ -1.54
SCFD1-209ENST00000553280 ZNF215Q9UL58 517 aaPredicted RBP5.41□□□□□ -1.54
SCFD1-209ENST00000553280 CORO1CQ9ULV4 474 aaPredicted RBP5.41□□□□□ -1.54
SCFD1-209ENST00000553280 EPN1Q9Y6I3 576 aaPredicted RBP5.41□□□□□ -1.54
SCFD1-209ENST00000553280 KCNE2Q9Y6J6 123 aa5.41□□□□□ -1.54
SCFD1-209ENST00000553280 PASKQ96RG2 1323 aa5.41□□□□□ -1.54
SCFD1-209ENST00000553280 COL4A3Q01955 1670 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 BTBD19C9JJ37 291 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 P4HA2O15460 535 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 CEP104O60308 925 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 STARD3NLO95772 234 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 TUBB4AP04350 444 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 CSH1P0DML2 217 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 CSH2P0DML3 217 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 DRD4P21917 467 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 PSMB10P40306 273 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 HADHAP40939 763 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 AVPR1BP47901 424 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 CPA2P48052 419 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 NLRP5P59047 1200 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 HOXA4Q00056 320 aaPredicted RBP5.4□□□□□ -1.54
SCFD1-209ENST00000553280 TMEM115Q12893 351 aaPredicted RBP5.4□□□□□ -1.54
SCFD1-209ENST00000553280 CHAF1BQ13112 559 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 FBXO43Q4G163 708 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 SLC29A4Q7RTT9 530 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 NEK8Q86SG6 692 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 SCFD2Q8WU76 684 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 DAZAP1Q96EP5 407 aaKnown RBP5.4□□□□□ -1.54
SCFD1-209ENST00000553280 CCDC17Q96LX7 622 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 KLHL15Q96M94 604 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 BBC3Q96PG8 261 aaPredicted RBP5.4□□□□□ -1.54
SCFD1-209ENST00000553280 ASB2Q96Q27 587 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 ZNF347Q96SE7 839 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 MACROD1Q9BQ69 325 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 SLC32A1Q9H598 525 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 ERVK-5Q9HDB9 667 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 ARL15Q9NXU5 204 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 EHD2Q9NZN4 543 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 FOXJ2Q9P0K8 574 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 UPB1Q9UBR1 384 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 HSPB7Q9UBY9 170 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 TMEM5Q9Y2B1 443 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 CLDN16Q9Y5I7 305 aa5.4□□□□□ -1.54
SCFD1-209ENST00000553280 SALL3Q9BXA9 1300 aa5.4□□□□□ -1.55
SCFD1-209ENST00000553280 OR6C68A6NDL8 312 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 TMEM247A6NEH6 219 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 KCNJ18B7U540 433 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 H7C1Q1 480 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 LDLRAD4O15165 306 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 STRNO43815 780 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 EIF2S1P05198 315 aaKnown RBP5.39□□□□□ -1.55
SCFD1-209ENST00000553280 CYP2D6P10635 497 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 KRT4P19013 534 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 CDH2P19022 906 aaPredicted RBP5.39□□□□□ -1.55
SCFD1-209ENST00000553280 CD72P21854 359 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 ACSL1P33121 698 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 IDUAP35475 653 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 CLK3P49761 638 aaKnown RBP5.39□□□□□ -1.55
SCFD1-209ENST00000553280 CYP4A11Q02928 519 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 EPS8Q12929 822 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 FOXI1Q12951 378 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 SLC14A1Q13336 389 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 BECN1Q14457 450 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 GSTA3Q16772 222 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 PFKFB3Q16875 520 aaPredicted RBP5.39□□□□□ -1.55
SCFD1-209ENST00000553280 ANXA2RQ3ZCQ2 193 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 VWA5B1Q5TIE3 1220 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 NCEH1Q6PIU2 408 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 ZNF474Q6S9Z5 364 aaPredicted RBP5.39□□□□□ -1.55
SCFD1-209ENST00000553280 RANBP10Q6VN20 620 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 Q6YL49 198 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 TRIM72Q6ZMU5 477 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 KRT74Q7RTS7 529 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 SZRD1Q7Z422 152 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 MRGPRGQ86SM5 289 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 WDTC1Q8N5D0 677 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 SCAIQ8N9R8 606 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 SLC9A6Q92581 669 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 ARHGEF2Q92974 986 aaKnown RBP5.39□□□□□ -1.55
SCFD1-209ENST00000553280 CAVIN3Q969G5 261 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 FEM1CQ96JP0 617 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 ADAD1Q96M93 576 aaKnown RBP5.39□□□□□ -1.55
SCFD1-209ENST00000553280 NUAK2Q9H093 628 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.39□□□□□ -1.55
SCFD1-209ENST00000553280 CYP4F11Q9HBI6 524 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 Q9N2J8 555 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 CDH22Q9UJ99 828 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 SNX8Q9Y5X2 465 aa5.39□□□□□ -1.55
SCFD1-209ENST00000553280 SYNDIG1LA6NDD5 238 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms