RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 SLC12A9Q9BXP2 914 aa14.83□□□□□ -0.04
VPS29-209ENST00000551655 BACH2Q9BYV9 841 aa14.83□□□□□ -0.04
VPS29-209ENST00000551655 IRX2Q9BZI1 471 aaPredicted RBP14.83□□□□□ -0.04
VPS29-209ENST00000551655 BLZF1Q9H2G9 400 aa14.83□□□□□ -0.04
VPS29-209ENST00000551655 DMAC2Q9NW81 257 aa14.83□□□□□ -0.04
VPS29-209ENST00000551655 NCKIPSDQ9NZQ3 722 aa14.83□□□□□ -0.04
VPS29-209ENST00000551655 PNMA8BQ9ULN7 279 aaPredicted RBP14.83□□□□□ -0.04
VPS29-209ENST00000551655 TRPM6Q9BX84 2022 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 A0A1W2PQM1 296 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 D6RAR5 112 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 XPO1O14980 1071 aaKnown RBP14.82□□□□□ -0.04
VPS29-209ENST00000551655 SPTLC2O15270 562 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 NVLO15381 856 aaKnown RBP14.82□□□□□ -0.04
VPS29-209ENST00000551655 MTSS1O43312 755 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 GABBR2O75899 941 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 CD2BP2O95400 341 aaKnown RBP14.82□□□□□ -0.04
VPS29-209ENST00000551655 CELA2BP08218 269 aaPredicted RBP14.82□□□□□ -0.04
VPS29-209ENST00000551655 UQCRFS1P47985 274 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 GCLMP48507 274 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 ADKP55263 362 aaKnown RBP14.82□□□□□ -0.04
VPS29-209ENST00000551655 DAOAP59103 153 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 CCL7P80098 99 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 EIF2B5Q13144 721 aaKnown RBP14.82□□□□□ -0.04
VPS29-209ENST00000551655 PDE1CQ14123 709 aaPredicted RBP14.82□□□□□ -0.04
VPS29-209ENST00000551655 TCEA2Q15560 299 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 DLG2Q15700 870 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 E2F4Q16254 413 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 RAP1GAP2Q684P5 730 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 ZNF787Q6DD87 383 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 KYAT3Q6YP21 454 aaKnown RBP14.82□□□□□ -0.04
VPS29-209ENST00000551655 DTX1Q86Y01 620 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 SIX6OS1Q8N1H7 587 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 SDR16C5Q8N3Y7 309 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 USP7Q93009 1102 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 NAT6Q93015 286 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 CCDC74AQ96AQ1 378 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 MIB2Q96AX9 1013 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 DHX58Q96C10 678 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 IMPG2Q9BZV3 1241 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 ANAPC2Q9UJX6 822 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 TSPAN16Q9UKR8 245 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 PADI4Q9UM07 663 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 C2CD3Q4AC94 2353 aa14.82□□□□□ -0.04
VPS29-209ENST00000551655 SDK2Q58EX2 2172 aa14.81□□□□□ -0.04
VPS29-209ENST00000551655 CSMD1Q96PZ7 3565 aa14.81□□□□□ -0.04
VPS29-209ENST00000551655 A1L4Q6 167 aa14.81□□□□□ -0.04
VPS29-209ENST00000551655 C9orf172C9J069 976 aa14.81□□□□□ -0.04
VPS29-209ENST00000551655 KPNA3O00505 521 aaPredicted RBP14.81□□□□□ -0.04
VPS29-209ENST00000551655 MCF2LO15068 1137 aa14.81□□□□□ -0.04
VPS29-209ENST00000551655 RPLP0P05388 317 aaKnown RBP14.81□□□□□ -0.04
VPS29-209ENST00000551655 RGS7P49802 495 aa14.81□□□□□ -0.04
VPS29-209ENST00000551655 MAPK10P53779 464 aa14.81□□□□□ -0.04
VPS29-209ENST00000551655 PPP3CAQ08209 521 aa14.81□□□□□ -0.04
VPS29-209ENST00000551655 EIF3IQ13347 325 aaKnown RBP14.81□□□□□ -0.04
VPS29-209ENST00000551655 TMEM259Q4ZIN3 620 aa14.81□□□□□ -0.04
VPS29-209ENST00000551655 PRRT3Q5FWE3 981 aa14.81□□□□□ -0.04
VPS29-209ENST00000551655 OR52K2Q8NGK3 314 aa14.81□□□□□ -0.04
VPS29-209ENST00000551655 TMC2Q8TDI7 906 aa14.81□□□□□ -0.04
VPS29-209ENST00000551655 TMX3Q96JJ7 454 aa14.81□□□□□ -0.04
VPS29-209ENST00000551655 GFM1Q96RP9 751 aaKnown RBP14.81□□□□□ -0.04
VPS29-209ENST00000551655 STRADBQ9C0K7 418 aa14.81□□□□□ -0.04
VPS29-209ENST00000551655 CISHQ9NSE2 258 aa14.81□□□□□ -0.04
VPS29-209ENST00000551655 SIRPGQ9P1W8 387 aa14.81□□□□□ -0.04
VPS29-209ENST00000551655 CGNQ9P2M7 1197 aaKnown RBP14.81□□□□□ -0.04
VPS29-209ENST00000551655 IPO11Q9UI26 975 aaKnown RBP14.81□□□□□ -0.04
VPS29-209ENST00000551655 VPS37CA5D8V6 355 aaPredicted RBP14.8□□□□□ -0.04
VPS29-209ENST00000551655 TPP1O14773 563 aa14.8□□□□□ -0.04
VPS29-209ENST00000551655 ATP9BO43861 1147 aa14.8□□□□□ -0.04
VPS29-209ENST00000551655 PAK4O96013 591 aaPredicted RBP14.8□□□□□ -0.04
VPS29-209ENST00000551655 COL8A1P27658 744 aa14.8□□□□□ -0.04
VPS29-209ENST00000551655 RPIAP49247 311 aa14.8□□□□□ -0.04
VPS29-209ENST00000551655 SLC8A3P57103 927 aa14.8□□□□□ -0.04
VPS29-209ENST00000551655 CEP135Q66GS9 1140 aa14.8□□□□□ -0.04
VPS29-209ENST00000551655 NEK5Q6P3R8 708 aa14.8□□□□□ -0.04
VPS29-209ENST00000551655 UNC13DQ70J99 1090 aa14.8□□□□□ -0.04
VPS29-209ENST00000551655 KYQ8NBH2 561 aa14.8□□□□□ -0.04
VPS29-209ENST00000551655 WDR48Q8TAF3 677 aa14.8□□□□□ -0.04
VPS29-209ENST00000551655 SEMA4DQ92854 862 aa14.8□□□□□ -0.04
VPS29-209ENST00000551655 AZIN2Q96A70 460 aa14.8□□□□□ -0.04
VPS29-209ENST00000551655 DDX50Q9BQ39 737 aaKnown RBP14.8□□□□□ -0.04
VPS29-209ENST00000551655 LRRC61Q9BV99 259 aa14.8□□□□□ -0.04
VPS29-209ENST00000551655 CPEB1Q9BZB8 566 aaKnown RBP14.8□□□□□ -0.04
VPS29-209ENST00000551655 CLPBQ9H078 707 aa14.8□□□□□ -0.04
VPS29-209ENST00000551655 GULP1Q9UBP9 304 aa14.8□□□□□ -0.04
VPS29-209ENST00000551655 APOBEC3BQ9UH17 382 aaKnown RBP14.8□□□□□ -0.04
VPS29-209ENST00000551655 PCDHB11Q9Y5F2 797 aa14.8□□□□□ -0.04
VPS29-209ENST00000551655 YY2O15391 372 aa14.79□□□□□ -0.04
VPS29-209ENST00000551655 AGFG2O95081 481 aa14.79□□□□□ -0.04
VPS29-209ENST00000551655 TACR2P21452 398 aa14.79□□□□□ -0.04
VPS29-209ENST00000551655 BST2Q10589 180 aaKnown RBP14.79□□□□□ -0.04
VPS29-209ENST00000551655 CXorf57Q6NSI4 855 aaKnown RBP14.79□□□□□ -0.04
VPS29-209ENST00000551655 CHSY1Q86X52 802 aa14.79□□□□□ -0.04
VPS29-209ENST00000551655 DCP2Q8IU60 420 aaKnown RBP14.79□□□□□ -0.04
VPS29-209ENST00000551655 CCAR2Q8N163 923 aaKnown RBP14.79□□□□□ -0.04
VPS29-209ENST00000551655 CHST14Q8NCH0 376 aa14.79□□□□□ -0.04
VPS29-209ENST00000551655 DQX1Q8TE96 717 aaKnown RBP14.79□□□□□ -0.04
VPS29-209ENST00000551655 ERCC4Q92889 916 aaPredicted RBP14.79□□□□□ -0.04
VPS29-209ENST00000551655 TMPRSS4Q9NRS4 437 aa14.79□□□□□ -0.04
VPS29-209ENST00000551655 SMC3Q9UQE7 1217 aa14.79□□□□□ -0.04
VPS29-209ENST00000551655 DAAM1Q9Y4D1 1078 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms