RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 SIN3BO75182 1162 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 ZRANB2O95218 330 aaKnown RBP eCLIP16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 GABRG2P18507 467 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 SERPINB6P35237 376 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 GEMIN4P57678 1058 aaKnown RBP16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 ARF5P84085 180 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 AFMIDQ63HM1 303 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 LEKR1Q6ZMV7 388 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 ZNF662Q6ZS27 426 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 PEX26Q7Z412 305 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 LONP2Q86WA8 852 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 RASSF3Q86WH2 238 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 ARHGAP12Q8IWW6 846 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 FRS2Q8WU20 508 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 ATOH1Q92858 354 aaPredicted RBP16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 PTPRN2Q92932 1015 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 FAF2Q96CS3 445 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 RNF157Q96PX1 679 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 PHOX2BQ99453 314 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 TPSD1Q9BZJ3 242 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 ZSCAN32Q9NX65 697 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 EBF1Q9UH73 591 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 CKAP5Q14008 2032 aa16.57■□□□□ 0.24
CHMP1A-209ENST00000550872 MUC22E2RYF6 1773 aaPredicted RBP16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 CCDC163A0A0D9SF12 145 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 ZSCAN5CA6NGD5 496 aaPredicted RBP16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 C3orf70A6NLC5 250 aaPredicted RBP16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 ZNF487B1APH4 448 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 BNIP3LO60238 219 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 FTCDO95954 541 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 VAV1P15498 845 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 NDUFV2P19404 249 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 CTNNA2P26232 953 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 CTNNA1P35221 906 aaKnown RBP16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 MARCKSL1P49006 195 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 SERPINH1P50454 418 aaKnown RBP16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 CLCN6P51797 869 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 MFSD7Q6UXD7 560 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 KIAA1324Q6UXG2 1013 aaKnown RBP16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 NT5DC3Q86UY8 548 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 WDR5BQ86VZ2 330 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 VSIG1Q86XK7 387 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 TMPRSS6Q8IU80 811 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 TP53INP2Q8IXH6 220 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 KATNAL2Q8IYT4 538 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 RCOR2Q8IZ40 523 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 PQLC3Q8N755 202 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 MDGA1Q8NFP4 955 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 OR2T3Q8NH03 318 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 KRT35Q92764 455 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 NELL1Q92832 810 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 SLC6A17Q9H1V8 727 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 FBRSQ9HAH7 460 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 FCF1Q9Y324 198 aaKnown RBP16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 PCDHA3Q9Y5H8 950 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 ACTL7AQ9Y615 435 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 CAPN6Q9Y6Q1 641 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 DMDP11532 3685 aa16.56■□□□□ 0.24
CHMP1A-209ENST00000550872 CXorf51AA0A1B0GTR3 108 aa16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 CCDC66A2RUB6 948 aa16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 CD160O95971 181 aa16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 DNA2P51530 1060 aa16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 COPAP53621 1224 aa16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 PAFAH1B3Q15102 231 aaKnown RBP16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 C9orf64Q5T6V5 341 aa16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 NCBP2-AS2Q69YL0 99 aa16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 SPOCD1Q6ZMY3 1216 aa16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 Q6ZVU0 165 aa16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 RFX6Q8HWS3 928 aa16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 CCDC50Q8IVM0 306 aa16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 STK40Q8N2I9 435 aa16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 EXD1Q8NHP7 514 aa16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 PRCCQ92733 491 aaPredicted RBP16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 SIPA1Q96FS4 1042 aa16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 RBM41Q96IZ5 413 aaKnown RBP16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 MRGPRX1Q96LB2 322 aa16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 MKRN2Q9H000 416 aaKnown RBP16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 PRDM16Q9HAZ2 1276 aa16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 SP110Q9HB58 689 aa16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 IPO11Q9UI26 975 aaKnown RBP16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 PCDHGA2Q9Y5H1 932 aa16.55■□□□□ 0.24
CHMP1A-209ENST00000550872 CFAP54Q96N23 3096 aa16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 PROB1E7EW31 1015 aa16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 J3KR12 359 aa16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 APOL1O14791 398 aa16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 PRAMEF11O60813 436 aa16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 RNASEH1O60930 286 aaKnown RBP16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 CDKN2BP42772 138 aa16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 RECQLP46063 649 aaPredicted RBP16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 RWDD2BP57060 319 aa16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 LLGL1Q15334 1064 aa16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 USP39Q53GS9 565 aaKnown RBP16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 ZNF776Q68DI1 518 aaPredicted RBP16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 C22orf39Q6P5X5 142 aa16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 ZC3H14Q6PJT7 736 aaKnown RBP16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 ARHGAP36Q6ZRI8 547 aa16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 CACUL1Q86Y37 369 aa16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 ZBTB44Q8NCP5 570 aa16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 CASKIN2Q8WXE0 1202 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms