RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 C2CD4BA6NLJ0 364 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 C10orf142B7Z368 130 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 WNT9AO14904 365 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 VILLO15195 856 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 SMAD6O43541 496 aaKnown RBP16.72■□□□□ 0.27
VPS29-207ENST00000549970 PLRG1O43660 514 aaKnown RBP16.72■□□□□ 0.27
VPS29-207ENST00000549970 ENDOD1O94919 500 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 WNT1P04628 370 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 CD38P28907 300 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 MAT2AP31153 395 aaKnown RBP16.72■□□□□ 0.27
VPS29-207ENST00000549970 TYRO3Q06418 890 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 PTP4A2Q12974 167 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 PRAMEF14Q5SWL7 426 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 AGBL4Q5VU57 503 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 DBX2Q6ZNG2 339 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 RAB44Q7Z6P3 723 aaPredicted RBP16.72■□□□□ 0.27
VPS29-207ENST00000549970 DRC7Q8IY82 874 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 GATA6Q92908 595 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 FAM131CQ96AQ9 280 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 SKA1Q96BD8 255 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 CCDC114Q96M63 670 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 ERGIC2Q96RQ1 377 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 HSD3B7Q9H2F3 369 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 ZNF212Q9UDV6 495 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 FARP1Q9Y4F1 1045 aaPredicted RBP16.72■□□□□ 0.27
VPS29-207ENST00000549970 AKAP13Q12802 2813 aa16.72■□□□□ 0.27
VPS29-207ENST00000549970 ILVBLA1L0T0 632 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 CBX4O00257 560 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 KPNA3O00505 521 aaPredicted RBP16.71■□□□□ 0.27
VPS29-207ENST00000549970 SLC7A4O43246 635 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 CTSLP07711 333 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 KRT3P12035 628 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 ATP1A3P13637 1013 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 CHRNA3P32297 505 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 CLEC16AQ2KHT3 1053 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 ARL13BQ3SXY8 428 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 C22orf39Q6P5X5 142 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 APTXQ7Z2E3 356 aaKnown RBP16.71■□□□□ 0.27
VPS29-207ENST00000549970 GLRX5Q86SX6 157 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 PRPF39Q86UA1 669 aaKnown RBP16.71■□□□□ 0.27
VPS29-207ENST00000549970 SLCO6A1Q86UG4 719 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 OR2A12Q8NGT7 310 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 BAHD1Q8TBE0 780 aaPredicted RBP16.71■□□□□ 0.27
VPS29-207ENST00000549970 SELENOOQ9BVL4 669 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 TNKS2Q9H2K2 1166 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 KDM4CQ9H3R0 1056 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 ATP13A1Q9HD20 1204 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 TMEM63CQ9P1W3 806 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 PPARGC1AQ9UBK2 798 aaKnown RBP16.71■□□□□ 0.27
VPS29-207ENST00000549970 OR12D3Q9UGF7 316 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 TPX2Q9ULW0 747 aaKnown RBP16.71■□□□□ 0.27
VPS29-207ENST00000549970 APOBEC2Q9Y235 224 aaKnown RBP16.71■□□□□ 0.27
VPS29-207ENST00000549970 MSRB2Q9Y3D2 182 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 DOCK9Q9BZ29 2069 aa16.71■□□□□ 0.27
VPS29-207ENST00000549970 CFAP47Q6ZTR5 3102 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 ZFHX4Q86UP3 3567 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 A0A1W2PR77 199 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 LRRC10BA6NIK2 292 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 GOLGA8CPA6NN73 597 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 LATO43561 262 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 CALB1P05937 261 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 ADRA1BP35368 520 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 PTPN9P43378 593 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 CLCN6P51797 869 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 GNA12Q03113 381 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 ANO6Q4KMQ2 910 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 RETSATQ6NUM9 610 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 RWDD4Q6NW29 188 aaKnown RBP16.7■□□□□ 0.26
VPS29-207ENST00000549970 ZNF783Q6ZMS7 281 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 STRADAQ7RTN6 431 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 PHF13Q86YI8 300 aaPredicted RBP16.7■□□□□ 0.26
VPS29-207ENST00000549970 CCDC185Q8N715 623 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 CHST14Q8NCH0 376 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 GRIN3AQ8TCU5 1115 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 FAM172AQ8WUF8 416 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 ADAMTS14Q8WXS8 1223 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 ELF4Q99607 663 aaPredicted RBP16.7■□□□□ 0.26
VPS29-207ENST00000549970 CDC6Q99741 560 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 AGPAT1Q99943 283 aa16.7■□□□□ 0.26
VPS29-207ENST00000549970 IGF2RP11717 2491 aa16.69■□□□□ 0.26
VPS29-207ENST00000549970 A0A1B0GTQ1 180 aa16.69■□□□□ 0.26
VPS29-207ENST00000549970 RNF103O00237 685 aa16.69■□□□□ 0.26
VPS29-207ENST00000549970 PCDHGA12O60330 932 aa16.69■□□□□ 0.26
VPS29-207ENST00000549970 DFNA5O60443 496 aa16.69■□□□□ 0.26
VPS29-207ENST00000549970 GPD1P21695 349 aa16.69■□□□□ 0.26
VPS29-207ENST00000549970 RFC1P35251 1148 aaPredicted RBP16.69■□□□□ 0.26
VPS29-207ENST00000549970 GRK6P43250 576 aa16.69■□□□□ 0.26
VPS29-207ENST00000549970 RECQLP46063 649 aaPredicted RBP16.69■□□□□ 0.26
VPS29-207ENST00000549970 HDAC4P56524 1084 aa16.69■□□□□ 0.26
VPS29-207ENST00000549970 GSCP56915 257 aaPredicted RBP16.69■□□□□ 0.26
VPS29-207ENST00000549970 ARF5P84085 180 aa16.69■□□□□ 0.26
VPS29-207ENST00000549970 SLC45A4Q5BKX6 768 aa16.69■□□□□ 0.26
VPS29-207ENST00000549970 PIP5KL1Q5T9C9 394 aa16.69■□□□□ 0.26
VPS29-207ENST00000549970 MANEALQ5VSG8 457 aa16.69■□□□□ 0.26
VPS29-207ENST00000549970 NAPEPLDQ6IQ20 393 aa16.69■□□□□ 0.26
VPS29-207ENST00000549970 TRIM69Q86WT6 500 aa16.69■□□□□ 0.26
VPS29-207ENST00000549970 GATAD2AQ86YP4 633 aa16.69■□□□□ 0.26
VPS29-207ENST00000549970 C3orf20Q8ND61 904 aa16.69■□□□□ 0.26
VPS29-207ENST00000549970 ARRDC3Q96B67 414 aa16.69■□□□□ 0.26
VPS29-207ENST00000549970 MAGEB5Q9BZ81 275 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms