RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 BAP1Q92560 729 aa13.18□□□□□ -0.3
PTCH1-218ENST00000548945 PGAP3Q96FM1 320 aaPredicted RBP13.18□□□□□ -0.3
PTCH1-218ENST00000548945 DCBLD2Q96PD2 775 aa13.18□□□□□ -0.3
PTCH1-218ENST00000548945 MUC3BQ9H195 1237 aa13.18□□□□□ -0.3
PTCH1-218ENST00000548945 KLHL11Q9NVR0 708 aa13.18□□□□□ -0.3
PTCH1-218ENST00000548945 ARHGEF38Q9NXL2 777 aa13.18□□□□□ -0.3
PTCH1-218ENST00000548945 M0QYT0 321 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 TLX3O43711 291 aaPredicted RBP13.17□□□□□ -0.3
PTCH1-218ENST00000548945 F9P00740 461 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 PRNPP04156 253 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 ERBB2P04626 1255 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 SRCP12931 536 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 PON1P27169 355 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 CHRNA3P32297 505 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 KRT9P35527 623 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 SCNN1AP37088 669 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 CXCR3P49682 368 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 NUMBP49757 651 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 CLDN6P56747 220 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 SEMG2Q02383 582 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 KCNMA1Q12791 1236 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 HS1BP3Q53T59 392 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 C14orf80Q86SX3 495 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 HORMAD1Q86X24 394 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 PASD1Q8IV76 773 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 DCAF4L2Q8NA75 395 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 ATP11CQ8NB49 1132 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 LSM14AQ8ND56 463 aaKnown RBP13.17□□□□□ -0.3
PTCH1-218ENST00000548945 OR2A12Q8NGT7 310 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 OR4C6Q8NH72 309 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 NT5C3BQ969T7 300 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 IFT43Q96FT9 208 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 C1orf74Q96LT6 269 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 NPY6RQ99463 290 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 PRORYQ9H606 182 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 WDCPQ9H6R7 721 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 SYNCQ9H7C4 482 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 DYRK4Q9NR20 520 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 PIGVQ9NUD9 493 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 VPS51Q9UID3 782 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 STAP1Q9ULZ2 295 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 CLCA2Q9UQC9 943 aa13.17□□□□□ -0.3
PTCH1-218ENST00000548945 COL6A6A6NMZ7 2263 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 DRGXA6NNA5 263 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 SIGLEC6O43699 453 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 MT-CO1P00395 513 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 CTSLP07711 333 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 RHOCP08134 193 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 THEGLP0DJG4 465 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 HNRNPA2B1P22626 353 aaKnown RBP13.16□□□□□ -0.3
PTCH1-218ENST00000548945 GLDCP23378 1020 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 DGKAP23743 735 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 AKT2P31751 481 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 BPIFB4P59827 614 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 INSM1Q01101 510 aaPredicted RBP13.16□□□□□ -0.3
PTCH1-218ENST00000548945 ZNF284Q2VY69 593 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 POM121L1PQ3SYA9 428 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 PTPN20Q4JDL3 420 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 OTUD1Q5VV17 481 aaPredicted RBP13.16□□□□□ -0.3
PTCH1-218ENST00000548945 LRRC31Q6UY01 552 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 ZNF783Q6ZMS7 281 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 DCP2Q8IU60 420 aaKnown RBP13.16□□□□□ -0.3
PTCH1-218ENST00000548945 ZNF683Q8IZ20 524 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 SLC25A45Q8N413 288 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 FGF11Q92914 225 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 CRELD1Q96HD1 420 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 PPP1R16AQ96I34 528 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 PSMB7Q99436 277 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 HDAC8Q9BY41 377 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 TKTL2Q9H0I9 626 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 SIK2Q9H0K1 926 aa13.16□□□□□ -0.3
PTCH1-218ENST00000548945 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.16□□□□□ -0.3
PTCH1-218ENST00000548945 IGLV3-10A0A075B6K4 115 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 CXorf51AA0A1B0GTR3 108 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 A0A1W2PQU0 124 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 KPNA3O00505 521 aaPredicted RBP13.15□□□□□ -0.3
PTCH1-218ENST00000548945 TRIM38O00635 465 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 SLC31A1O15431 190 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 BNIP3LO60238 219 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 BRINP1O60477 761 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 SNAP91O60641 907 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 SDC3O75056 442 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 CNTN5O94779 1100 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 ADCY5O95622 1261 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 CKMT1AP12532 417 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 PRKCSHP14314 528 aaPredicted RBP13.15□□□□□ -0.3
PTCH1-218ENST00000548945 ITPKBP27987 946 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 CLCN1P35523 988 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 ACTN2P35609 894 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 GGCXP38435 758 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 GABRB2P47870 512 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 SLC20A2Q08357 652 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 SLC25A52Q3SY17 297 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 TMEM259Q4ZIN3 620 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 ALFQ53S48 1182 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 ERN2Q76MJ5 926 aaKnown RBP13.15□□□□□ -0.3
PTCH1-218ENST00000548945 ABI3BPQ7Z7G0 1075 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 ZSCAN30Q86W11 494 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 IRF2BP1Q8IU81 584 aa13.15□□□□□ -0.3
PTCH1-218ENST00000548945 FAM71AQ8IYT1 594 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms